User: Vijay Lakhujani
Vijay Lakhujani • 2.1k
- Reputation:
- 2,080
- Status:
- Trusted
- Location:
- India
- Twitter:
- vijay_lakhujani
- Scholar ID:
- Google Scholar Page
- Last seen:
- 5 minutes ago
- Joined:
- 2 years ago
- Email:
- l*************@gmail.com
Bioinformatician ♦ Programmer ♦ Learner
Howdy!
- I am a bioinformatician with deep interest in Genomics, specially in next generation sequencing techniques (NGS). I enjoy programming and I usually code in
Python,PERL,RandBASH. Programming is so much fun! - I also try to learn technical stuff with the help of MOOCs. I believe the best way to keep yourself updated is to keep learning. I also write sometimes on technical and non technical stuff. You can check out some of my articles on LinkedIn.
- I love making new friends and discussing ideas. Do not hesitate to drop me an email if I could be of some help :)
Let's connect !
Posts by Vijay Lakhujani
<prev
• 402 results •
page 1 of 41 •
next >
0
votes
0
answers
18
views
0
answers
... Strange that it worked for you without specifying quality `INT` in `-q` option. It failed in my case
/opt/app/TrimGalore-0.4.5/trim_galore --fastqc --illumina ../test.fq -q
Option q requires an argument
Please respecify command line options
I checked the help
/opt/app/TrimGalore-0 ...
written 1 minute ago by
Vijay Lakhujani • 2.1k
2
votes
1
answer
71
views
1
answers
Answer:
A: about the alignement
... This appears to me as the most trivial nucleotide identity matrix, however, please format it correctly. Generally, `1` being match and `0` being mismatch. In a diagonally symmetric matrix like this , the order of the nucleotide in the rows and columns should be same. ...
written 21 hours ago by
Vijay Lakhujani • 2.1k
1
vote
1
answer
104
views
1
answers
Comment:
C: plot the distribution
... Please provide headers to your columns for others to understand ...
written 21 hours ago by
Vijay Lakhujani • 2.1k
0
votes
4
answers
123
views
4
answers
Answer:
A: How do you use BLAST?
... I have frequently used **BLAT** for aligning microarray probes (expression array probes ; generally ~60 bp, Agilent). Most of the times, the objective was to identify the gene it originated from or for the annotation. ...
written 3 days ago by
Vijay Lakhujani • 2.1k
1
vote
1
answer
72
views
1
answers
... I don't know much about GWAS but I can surely give a analogy from microarray experiments. Sometimes, you may see aberrations in the Y chromosome in case of CGH arrays despite the sample being female.
There is a concept of unique and non-unique probes. The unique probes have the same chromosome numb ...
written 4 days ago by
Vijay Lakhujani • 2.1k
• updated
3 days ago by
zx8754 ♦ 4.3k
0
votes
2
answers
2.4k
views
2
answers
... Can you just briefly tell me the steps; I will figure out the exact commands myself. What I have is
- a genome file in fasta format (chr wise)
- a corresponding GTF file
- a read count file gene wise as shown above ...
written 4 days ago by
Vijay Lakhujani • 2.1k
2
votes
2
answers
120
views
2
answers
... Of course, if you want to do with your data being in the excel format and that too programatically (sensibly; **synonym** :D ) then may be you can use file parsers designed specially to manipulate excel files for e.g. [this][1] one.
Next option is transforming all data into simple text files and m ...
written 4 days ago by
Vijay Lakhujani • 2.1k
0
votes
2
answers
2.4k
views
2
answers
... Hi
Very nice project.
I am wondering if i could draw a barplot on a custom genome depicting the reads mapped on particular features; say "genes". So, that will be a pretty simple data set as given below
GeneID RawReadCount
14490.2 5
011470.2 24
14480.1 0
025190.2 12 ...
written 4 days ago by
Vijay Lakhujani • 2.1k
0
votes
1
answer
67
views
1
answers
Comment:
C: Hisat2 alignment error
... Could you try changing this
--novel-splicesite-outfile /data/memona/hisat2-2.1.0/result/
to
--novel-splicesite-outfile /data/memona/hisat2-2.1.0/result/novel.sites.txt ...
written 4 days ago by
Vijay Lakhujani • 2.1k
0
votes
1
answer
67
views
1
answers
Answer:
A: Hisat2 alignment error
... Looks like these issues have been already taken care in the recent version. Check your HISAT version using
hisat2 --version
Update if necessary ...
written 4 days ago by
Vijay Lakhujani • 2.1k
Latest awards to Vijay Lakhujani
Scholar
4 days ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher
4 weeks ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For Samtools flagstat number of reads do not match actual total number of reads.
Appreciated
7 weeks ago,
created a post with more than 5 votes.
For prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME
Scholar
8 weeks ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher
8 weeks ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Popular Question
12 weeks ago,
created a question with more than 1,000 views.
For Samtools flagstat number of reads do not match actual total number of reads.
Scholar
12 weeks ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Appreciated
3 months ago,
created a post with more than 5 votes.
For prepare_taxa_charts.py: A python program to automate taxonomic pie chart generation from QIIME
Scholar
5 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher
5 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Voter
5 months ago,
voted more than 100 times.
Teacher
7 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Scholar
7 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar
8 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar
9 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar
10 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar
10 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Guru
10 months ago,
received more than 100 upvotes.
Scholar
11 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar
11 months ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher
11 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Teacher
12 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Scholar
12 months ago,
created an answer that has been accepted.
For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher
12 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1060 users visited in the last hour