Moderator: Vijay Lakhujani

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Vijay Lakhujani3.0k
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https://lakhujanivijay...
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vijay_lakhujani
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2 years, 10 months ago
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Bioinformatician♦Programmer♦Learner


Howdy!

  • I am a bioinformatician with deep interest in Genomics, specially in next generation sequencing techniques (NGS). I enjoy programming and I usually code in Python, PERL, R and BASH. Programming is so much fun!
  • I also try to learn technical stuff with the help of MOOCs. I believe the best way to keep yourself updated is to keep learning. I also write sometimes on technical and non technical stuff. You can check out some of my articles on LinkedIn.
  • I love making new friends and discussing ideas. Do not hesitate to drop me an email if I could be of some help :)

Let's connect !

 

 

Posts by Vijay Lakhujani

<prev • 593 results • page 1 of 60 • next >
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Answer: A: What is the next step after download the ncbi sra data of pacbio RSII sequencing
... Hi https://www.biostars.org/u/19747/ I don't know about "pacbio ccs binary software" but you can generate CCS using pabio [SMRT link][1]. Take a look at the consensus sequence resulting from alignment between subreads taken from a single ZMW. Generation of the CCS read does not include or req ...
written 2 days ago by Vijay Lakhujani3.0k
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Comment: C: How to perform metagenomic binning using ESOM?
... Hi https://www.biostars.org/u/9490/ Thanks for the input once again. So, I was able to follow the instructions on the gihub page and thankfully all the programs worked as expected. For the sake of quick start, I just tried this with 2 files file name | num_seqs | sum_len | min_len | avg_len ...
written 3 days ago by Vijay Lakhujani3.0k
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Comment: C: split all fasta sequences in a multi fasta file from half into two sequences
... Hello https://www.biostars.org/u/43236/, Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. > I know how to split a big fasta files into multiple fasta files You should explain this by adding your code here. May be people ...
written 3 days ago by Vijay Lakhujani3.0k
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Comment: C: split all fasta sequences in a multi fasta file from half into two sequences
... You should first either use the biostars search utility to look for similar post or you can google like this to get answers from biostars.org. on google.com : [split fasta site:www.biostars.org][1] [1]: https://www.google.com/search?client=firefox-b&biw=1467&bih=629&ei=lUCfW5CyDtT-r ...
written 4 days ago by Vijay Lakhujani3.0k
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Comment: C: Separating some people from VCF file
... Appreciating the honesty, however, we expect you to explore some things first and then let us know if you encounter issues. We do not encourage questions asking for direct solutions. Thanks Vijay ...
written 6 days ago by Vijay Lakhujani3.0k
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Comment: C: How to draw this figure using these python code
... That link in inaccessible. I see following error: *Sorry, the page you requested is unavailable. The link you requested might be broken, or no longer exist.* ...
written 6 days ago by Vijay Lakhujani3.0k
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Comment: C: How to perform metagenomic binning using ESOM?
... Dear https://www.biostars.org/u/9490/ Thank you for the response. As I mentioned, the ultimate goal is to generate ESOMs ( that's the requirement of the project ). Maxbin, though will be easier as you mentioned, I think , will not provide emergent maps ; correct ? Additionally, I am looking at "Ca ...
written 7 days ago by Vijay Lakhujani3.0k
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How to perform metagenomic binning using ESOM?
... Hi all, I have a couple of metagenomic samples in the form of genomic assemblies and I wanted to perform binning and generate ESOM (Emergent self organizing maps) similar to the one mentioned in [Figure#1][1] of [this][2] paper. The primary objective is to generate ESOMs. I have tried to go through ...
metagenomics binning esom written 7 days ago by Vijay Lakhujani3.0k • updated 7 days ago by 5heikki7.6k
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Comment: C: Explanation on Paired end single index for RNA seq
... Dear https://www.biostars.org/u/48913/ This is an unrelated post in context to the original question and should a treated and posted as a new question. This will help others and you as well. At biostars, we recommend re-posting this as a new question after making sure that similar question has not ...
written 13 days ago by Vijay Lakhujani3.0k
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Comment: C: Delete all files with a pattern.
... Hello Saroha! We believe that this post does not fit the main topic of this site. Not a bioinformatics question For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply be ...
written 4 weeks ago by Vijay Lakhujani3.0k

Latest awards to Vijay Lakhujani

Popular Question 4 weeks ago, created a question with more than 1,000 views. For Too low mapping percentage using HISAT2 on human reference genome.
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Error encountered while running stattest from ballgown package
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Good Answer 8 weeks ago, created an answer that was upvoted at least 5 times. For C: bioinformatics phd .in distance education forum ...
Appreciated 8 weeks ago, created a post with more than 5 votes. For C: bioinformatics phd .in distance education forum ...
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Error encountered while running stattest from ballgown package
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Scholar 11 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Popular Question 12 weeks ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Scholar 12 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Popular Question 3 months ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.
Popular Question 3 months ago, created a question with more than 1,000 views. For Error running Trinity
Scholar 3 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Appreciated 3 months ago, created a post with more than 5 votes. For C: bioinformatics phd .in distance education forum ...
Popular Question 3 months ago, created a question with more than 1,000 views. For Why does base quality of reads generally decreases at the end of the read?
Popular Question 3 months ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 3 months ago, created a question with more than 1,000 views. For Warning encountered while transcript abundance estimation using stringtie
Popular Question 3 months ago, created a question with more than 1,000 views. For Samtools flagstat number of reads do not match actual total number of reads.

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