Moderator: lakhujanivijay

gravatar for lakhujanivijay
lakhujanivijay5.3k
Reputation:
5,290
Status:
Trusted
Location:
India/Ahmedabad
Twitter:
vijay_lakhujani
Scholar ID:
Google Scholar Page
Last seen:
16 hours ago
Joined:
4 years, 11 months ago
Email:
l*************@gmail.com

Bioinformatician 💻 | ☕  Programmer 

A passionate bioinformatician interested in developing solutions for analyzing, visualizing and integrating clinical and research data.

Me = ( ¼ Bioinformatician ) + ( ¼ Programmer ) +  ( ½ Biologist )

Let's connect !

 

Find me on ORCID

ORCID iD iconhttps://orcid.org/0000-0002-6529-0841

Posts by lakhujanivijay

<prev • 931 results • page 1 of 94 • next >
0
votes
0
answers
66
views
0
answers
Comment: C: how to choose hub genes in wgcna
... Hi Parin Check out similar posts on Biostars and see if that helps https://www.biostars.org/p/419867/ https://www.biostars.org/p/294436/ Similar posts appear on the right of the original post ...
written 2 days ago by lakhujanivijay5.3k
0
votes
0
answers
123
views
0
answers
Comment: C: error while executing panX script (KeyError: 'db_xref').
... The program specific issues are hard to resolve here because many of the tools are not that popular. Best option is to raise an issue of the respective github repository. I could see similar issue reported [here][1] with no solution [1]: https://github.com/neherlab/pan-genome-analysis/issues/36 ...
written 12 days ago by lakhujanivijay5.3k
0
votes
0
answers
188
views
0
answers
Comment: C: Help needed with LOHHLA pipeline
... https://www.biostars.org/u/49081/ were you able to resolve the issue ? Can you check once if your BAM file is not truncated ? \* `samtools quickcheck -v -v -v -v ` \* Requires latest samtools version ...
written 21 days ago by lakhujanivijay5.3k
0
votes
1
answer
122
views
1
answers
Comment: C: network construction in cytoscape
... Hi https://www.biostars.org/u/63328/ Can you point us to the tutorial you are following ? ...
written 21 days ago by lakhujanivijay5.3k
2
votes
1
answer
92
views
1
answers
Answer: A: phenotype in meta analysis
... Hi Parin Quoting from [this][1] paper > One approach to increase power for GWASs on a phenotype that is hard > to collect is to utilize an intermediate or proxy phenotype that is > correlated to the target phenotype of interest. In this approach, one > intermediate or proxy phenotype, ...
written 23 days ago by lakhujanivijay5.3k
0
votes
0
answers
144
views
0
answers
Comment: C: Chia-pipe cannot find the module pigz
... Hi https://www.biostars.org/u/40156/ `/WGS_tools/ChIA-PIPE/0.chia_pipe_shell.sh: line 208: pigz: command not found` I could also see this error in your original post; were you able to resolve this? ...
written 4 weeks ago by lakhujanivijay5.3k
0
votes
0
answers
237
views
0
answers
Comment: C: Variant Calling pipeline to be run parallel on multiple cores
... Agree with what https://www.biostars.org/u/30/ said ...
written 5 weeks ago by lakhujanivijay5.3k
1
vote
0
answers
237
views
0
answers
Comment: C: Variant Calling pipeline to be run parallel on multiple cores
... **Using [GNU parallel][1] instead** > **psuedo code** import subprocess cmd_file_name = cmd_file.txt cmd_file = open(cmd_file_name, "a") jobs = 20 for i in your_sample_list : cmd = " ".join( [ "your command", "-i" , i ] ) cmd_file.write(cmd, "\n ...
written 5 weeks ago by lakhujanivijay5.3k • updated 5 weeks ago by RamRS30k
0
votes
0
answers
133
views
0
answers
Comment: C: hhblits and pssm
... Hi https://www.biostars.org/u/67543/ The title "hhblits and pssm" does not qualify as a good/informative title to your post. Please elaborate the title. ...
written 6 weeks ago by lakhujanivijay5.3k
0
votes
0
answers
153
views
0
answers
Comment: C: grep gene location from gff without removing duplication
... You need not add the whole file use `head ` and then paste the contents here ...
written 7 weeks ago by lakhujanivijay5.3k

Latest awards to lakhujanivijay

Popular Question 5 days ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Scholar 11 days ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Popular Question 23 days ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Scholar 23 days ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Popular Question 29 days ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 4 weeks ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: How to apply a function to a list and get results as a list in R?
Scholar 7 weeks ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Popular Question 10 weeks ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 3 months ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Popular Question 3 months ago, created a question with more than 1,000 views. For How to install samtools v.1.2 on Ubuntu 14.0 32 bit?
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: how to extract particular regions of a sequence from fasta file if its range fo
Popular Question 3 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: how to extract particular regions of a sequence from fasta file if its range fo
Appreciated 3 months ago, created a post with more than 5 votes. For A: How to extract unmapped Paired end reads from BWA output sam file
Popular Question 4 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 4 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 5 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Appreciated 5 months ago, created a post with more than 5 votes. For A: How to extract unmapped Paired end reads from BWA output sam file
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How to apply a function to a list and get results as a list in R?
Popular Question 6 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Popular Question 6 months ago, created a question with more than 1,000 views. For How are the variants called by samtools?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: How to apply a function to a list and get results as a list in R?
Scholar 7 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Scholar 7 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 950 users visited in the last hour