User: Vijay Lakhujani

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Vijay Lakhujani1.1k
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1 day, 18 hours ago
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☛     Genomics Domain Specialization: NET-JRF, GATE, BINC qualified.

☛     Certified bioinformatician (by Dept. of Biotechnology, Govt. of India.

☛      6+ years of experience in Genomics industry (specially NGS data analysis).

☛     Skilled in working with commercial/open source software for microarray and NGS end-to-end data analysis, from raw sequencing data to variant reporting. Whole genome,transcriptome, 16S rRNA NGS data analysis, de novo assembly tools & algorithms, assembly validation and downstream data processing.

☛     Sound knowledge of open source tools for data visualization and interpretation. Comfortable with working on Linux platform & HPC.

Posts by Vijay Lakhujani

<prev • 237 results • page 1 of 24 • next >
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Answer: A: Samtools rmdup and Piccard Markduplicates
... A similar discussion could be found [here][1] According to [Picard FAQs,][2] samtools rmdup do not remove interchromosomal duplicates while picard MarkDuplicates does! [1]: https://www.biostars.org/p/3917/ [2]: http://broadinstitute.github.io/picard/faq.html ...
written 4 days ago by Vijay Lakhujani1.1k
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Answer: A: Automatic functional annotation of protein sequences
... Blast2GO is a good and popular option as suggested by [Chirag][1]. It's a paid commercial software. An open source alternative would be to perform standalone blastp -> get the description. Use the hit accession to derive the GO ontologies using [UniprotKb][2] by retrieving the UniprotKB ids from ...
written 5 days ago by Vijay Lakhujani1.1k
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Comment: C: Error encountered while initial training with augustus for gene prediction of no
... Hi Cristina No, the problem remains the same. What is your organism? What files do you have? ~Vijay ...
written 11 days ago by Vijay Lakhujani1.1k
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Comment: C: How to Fix Error in snpeff
... It says, `ERROR_CHROMOSOME_NOT_FOUND 285197` Can you please check your vcf for this? ...
written 12 days ago by Vijay Lakhujani1.1k
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Comment: C: local blastp against NR database
... Hi [genomax][1], Can you please direct me to appropriate resources for installing and implementing job scheduler? I would like to learn more about it. [1]: https://www.biostars.org/u/18713/ ...
written 18 days ago by Vijay Lakhujani1.1k
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Comment: C: local blastp against NR database
... Hi Chirag, Thanks for asking that question; kind of similar doubt I am in. There is a nice post on [GNU parallel][1] which is a better approach and I am yet to implement it. You can give it a try. However, it is unusual that there is no output in 24 hours. Though that depends on your query size bu ...
written 19 days ago by Vijay Lakhujani1.1k
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Answer: A: What do outlined reads in IGV represent?
... A black outline indicates that the selected read has no mate. Source [here][1] [1]: https://software.broadinstitute.org/software/igv/v1.4 ...
written 20 days ago by Vijay Lakhujani1.1k
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Answer: A: Getting BLAST to give output whilst running
... I don't know if this helps but what I usually do is that I enable desktop notification on my PC; something like this: ![A desktop notification on the top right corner][1] This notification pops up; say every hour and tells me how many of the query sequences have been blasted so far (I already know ...
written 21 days ago by Vijay Lakhujani1.1k
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Answer: A: What to do after M.Sc in Bioinformatics ?
... > Does anyone know about benefits of BINC certification exam ( held by > Pondichery University, India) ?? From BINC [FAQs][1] "*While anyone with a Bachelors degree in Science, Medicine, Engineering etc. is eligible to appear in the BINC examination and receive a certificate, the fellowship ...
written 4 weeks ago by Vijay Lakhujani1.1k
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Comment: C: if i do mistake in library type parameter of trinity assembly, do i need to reas
... You might try out [Bridger][1] [1]: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0596-2 ...
written 4 weeks ago by Vijay Lakhujani1.1k

Latest awards to Vijay Lakhujani

Scholar 12 days ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 6 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 6 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Guru 7 weeks ago, received more than 100 upvotes.
Scholar 8 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 8 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 3 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Supporter 7 months ago, voted at least 25 times.
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: how to extract particular regions of a sequence from fasta file if its range fo
Centurion 7 months ago, created 100 posts.
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 9 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 10 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Autobiographer 10 months ago, has more than 80 characters in the information field of the user's profile.
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features

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