User: Vijay Lakhujani
Vijay Lakhujani • 1000
- Reputation:
- 1,000
- Status:
- Trusted
- Location:
- India
- Twitter:
- vijay_lakhujani
- Last seen:
- 59 minutes ago
- Joined:
- 1 year, 1 month ago
- Email:
- l*************@gmail.com
☛ Genomics Domain Specialization: NET-JRF, GATE, BINC qualified.
☛ Certified bioinformatician (by Dept. of Biotechnology, Govt. of India), All India Rank 18, BINC 2012).
☛ 6+ years of experience in Genomics industry (specially NGS data analysis).
☛ Skilled in working with commercial/open source software for microarray and NGS end-to-end data analysis, from raw sequencing data to variant reporting. Whole genome,transcriptome, 16S rRNA NGS data analysis, de novo assembly tools & algorithms, assembly validation and downstream data processing.
☛ Sound knowledge of open source tools for data visualization and interpretation. Comfortable with working on Linux platform & HPC.
Posts by Vijay Lakhujani
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... +1 for this. Precise answer! Can't agree more on that. **IS IT VALID** is more important than **HOW IT IS DONE**!!
That's the reason I asked "what's the null/alternate hypothesis". On top of that, p-value is seriously misunderstood in such cases (I am one of the victims of p value ;) ). I strongly ...
written 1 hour ago by
Vijay Lakhujani • 1000
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Answer:
A: Reads for assembly
... > I want to experience myself, how do we assemble the raw read data of a
> genome obtained from sequencer.
This is a very vague question. An assembly really depends on couple of factors like :
**type of sequence** - genome, transcriptome etc.
**what species/organism it is** - eukaryote/ pro ...
written 4 hours ago by
Vijay Lakhujani • 1000
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... You're welcome! first things first, let's discuss about the objective of this statistical test in your case. Let me know what is your "null" and "alternative" hypothesis i.e. what is that you want to prove/disprove through this test? ...
written 8 hours ago by
Vijay Lakhujani • 1000
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... Can see the picture! Check and upload again! ...
written 9 hours ago by
Vijay Lakhujani • 1000
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... What do you mean by adjusting header? Do you mean adding a missing header? ...
written 9 hours ago by
Vijay Lakhujani • 1000
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... R can by default perform chi square test. No specialized packages required. An example can be found [here][1]
Launch R and do:
?chisq.test
[1]: https://www.tutorialspoint.com/r/r_chi_square_tests.htm ...
written 9 hours ago by
Vijay Lakhujani • 1000
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... a list of some well known and validated tools
- ABySS
- SGA
- SOAPdenovo2 + GapCloser
- SPAdes
- Velvet
check out [this][1] paper also.
[1]: http://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2 ...
written 9 hours ago by
Vijay Lakhujani • 1000
0
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200
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... share session information by running:
> sessionInfo()
...
written 1 day ago by
Vijay Lakhujani • 1000
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... You can do like this; example installing an arbitrary package called "`foo`" along with its dependencies:
install.packages("foo", dependencies=TRUE)
...
written 1 day ago by
Vijay Lakhujani • 1000
1
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5
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181
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Comment:
C: Run Samtools on multiple files
... On a separate note, this is really cool, suggestions to learn how to use "make" (tutorial links) would be helpful for all. ...
written 3 days ago by
Vijay Lakhujani • 1000
Latest awards to Vijay Lakhujani
Scholar
4 days ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar
7 days ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher
12 days ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Teacher
4 weeks ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Scholar
8 weeks ago,
created an answer that has been accepted.
For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher
8 weeks ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Supporter
5 months ago,
voted at least 25 times.
Commentator
5 months ago,
created a comment with at least 3 up-votes.
For C: how to extract particular regions of a sequence from fasta file if its range fo
Centurion
6 months ago,
created 100 posts.
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Scholar
7 months ago,
created an answer that has been accepted.
For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher
7 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Scholar
8 months ago,
created an answer that has been accepted.
For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Autobiographer
9 months ago,
has more than 80 characters in the information field of the user's profile.
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
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