User: Vijay Lakhujani

gravatar for Vijay Lakhujani
Vijay Lakhujani1.7k
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India
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vijay_lakhujani
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4 days, 21 hours ago
Joined:
1 year, 9 months ago
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l*************@gmail.com
    Bioinformatician | Programmer | Learner

Howdy!

  • I am a bioinformatician with deep interest in Genomics, specially in next generation sequencing techniques (NGS). I enjoy programming and I usually code in Python, PERL, R and BASH. Programming is so much fun!
  • I also try to learn technical stuff with the help of MOOCs. I believe the best way to keep yourself updated is to keep learning. I also write sometimes on technical and non technical stuff. You can check out some of my articles on LinkedIn.
  • I love making new friends and discussing ideas. Do not hesitate to drop me an email if I could be of some help :)

Let's connect !

 

Posts by Vijay Lakhujani

<prev • 346 results • page 1 of 35 • next >
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Comment: C: error in identifying alternativce splcing using splAdder
... Whenever you see such error, the best way to start looking (when you are not much familiar with Python) is to google "`Python KeyError`"; you will surely have some idea, where to look into. PS: There are a couple of warnings as well. GTF files are boring to work with ;) ...
written 6 days ago by Vijay Lakhujani1.7k
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Answer: A: Renaming FASTA headers while keeping some previous information?
... I suggest you start familiarizing yourself with [seqkit][1] which is a super fast fasta/q manipulation tool kit. It's really easy to setup (you just need a file, no installation technically) and the documentation is too good. I know many non-technical people who are fairly comfortable using it. See ...
written 14 days ago by Vijay Lakhujani1.7k
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Comment: C: Internship in Genomics and Transcriptomics
... "a positive attitude towards research" Is that the only thing required? Please look at [the details][1] posted by others for similar openings [1]: https://www.biostars.org/p/296510/ ...
written 15 days ago by Vijay Lakhujani1.7k
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Comment: C: fastq parsing inefficiencies with python
... Completely agree with [Ram][1]. Quickly jump to [Biopython][2] [1]: https://www.biostars.org/u/8494/ [2]: http://biopython.org/wiki/SeqIO ...
written 15 days ago by Vijay Lakhujani1.7k
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Answer: A: What are some common (good) approaches to summarize and report BLAST results in
... I don't think there would be any such guidelines and that would heavily be dependent on user's discretion. For e.g. a user did a blastx for his/her sequences and wants to find to what organisms his sequences belong; i.e. a generalized picture. In that case a barplot of the top organism distribution ...
written 16 days ago by Vijay Lakhujani1.7k
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Comment: C: Maker Output: transcript names
... did you already get the answer for this? ...
written 19 days ago by Vijay Lakhujani1.7k
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Comment: C: BUSCOs running time
... It has been quite sometime now since the last post on this thread. I don't know if it would be relevant now but just in case if somebody landed on this post, I want to share the experience. Interesting, in the BUSCO training mode using the `--long` option, it failed for me with the `-c` option, no ...
written 20 days ago by Vijay Lakhujani1.7k
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Comment: C: Agilent CGH arrays - How to pool two results (two arrays)
... How does the files look like? Pasting a few rows with column headers would definitely help. Thanks ...
written 20 days ago by Vijay Lakhujani1.7k
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Comment: C: BUSCOs running time
... **UPDATE:** ---------- for me with around ~63k scaffolds, it took ~2 days with 1 CPU. My problem is that this script fails at my end with multiple cores given with `-c` option. ...
written 22 days ago by Vijay Lakhujani1.7k
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Comment: C: BUSCO/Augustus gff2gbSmallDNA very slow
... Did you somehow manage to solve the issue? ...
written 22 days ago by Vijay Lakhujani1.7k

Latest awards to Vijay Lakhujani

Scholar 10 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Voter 12 weeks ago, voted more than 100 times.
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 4 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 5 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 6 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 7 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 7 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Guru 7 months ago, received more than 100 upvotes.
Scholar 8 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 8 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 9 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Supporter 13 months ago, voted at least 25 times.
Commentator 13 months ago, created a comment with at least 3 up-votes. For C: how to extract particular regions of a sequence from fasta file if its range fo
Centurion 14 months ago, created 100 posts.
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 15 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 16 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features

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