Moderator: Vijay Lakhujani
Vijay Lakhujani ♦ 3.5k
- Reputation:
- 3,530
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- Trusted
- Location:
- India
- Website:
- https://lakhujanivijay...
- Twitter:
- vijay_lakhujani
- Scholar ID:
- Google Scholar Page
- Last seen:
- 15 hours ago
- Joined:
- 3 years, 1 month ago
- Email:
- l*************@gmail.com
Bioinformatician♦Programmer♦Learner
Howdy!
- I am a bioinformatician with deep interest in Genomics, specially in next generation sequencing techniques (NGS). I enjoy programming and I usually code in
Python,PERL,RandBASH. Programming is so much fun! - I also try to learn technical stuff with the help of MOOCs. I believe the best way to keep yourself updated is to keep learning. I also write sometimes on technical and non technical stuff. You can check out some of my articles on LinkedIn.
- I love making new friends and discussing ideas. Do not hesitate to drop me an email if I could be of some help :)
Let's connect !
Posts by Vijay Lakhujani
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... > I tried using dplyr but I am not able to get in the proper format.
Share you code here ...
written 3 days ago by
Vijay Lakhujani ♦ 3.5k
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... So, what you are concerned about is identical headers + identical sequence or ANY ONE of these 2? ...
written 18 days ago by
Vijay Lakhujani ♦ 3.5k
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... How many are there , just check using [seqkit][1]
zcat your_fastq_R1.fq.gz | seqkit rmdup -s -i -m -o clean.fa.gz -d duplicated.fa.gz -D duplicated.detail.txt
Source : https://bioinf.shenwei.me/seqkit/usage/#duplicate
[1]: https://bioinf.shenwei.me/seqkit/usage/#duplicate ...
written 18 days ago by
Vijay Lakhujani ♦ 3.5k
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... [Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows][1]
[1]: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty1026/5259186 ...
written 21 days ago by
Vijay Lakhujani ♦ 3.5k
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... Hello maryamtavasoli71!
We believe that this post does not fit the main topic of this site.
Pure R question. Not a bioinformatics question.
For this reason we have closed your question. This allows us to keep the site focused
on the topics that the community can help with.
If you disagree plea ...
written 21 days ago by
Vijay Lakhujani ♦ 3.5k
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Comment:
C: chatbot for genomics
... > Also, let me know the importance of machine learning in genomics.
That should be a separate post! ...
written 22 days ago by
Vijay Lakhujani ♦ 3.5k
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... Hello 610225668!
We believe that this post does not fit the main topic of this site.
Not a bioinformatics question.
For this reason we have closed your question. This allows us to keep the site focused
on the topics that the community can help with.
If you disagree please tell us why in a repl ...
written 22 days ago by
Vijay Lakhujani ♦ 3.5k
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135
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Comment:
C: merge data, R .excel
... Your question seems rather R instead of bioinformatics. It is likely someone will close your post for this reason. Additionally, you should let us know what have you tried so far.
...
written 22 days ago by
Vijay Lakhujani ♦ 3.5k
1
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Comment:
C: MD into bioinformatics
... > You are the only one allowed by law to offer advice to patients by
> acting on findings that we (as bioinformaticians) may come up with.
I strongly agree with https://www.biostars.org/u/18713/
I see you as a clinician who can translate the bioinformatics analysis reports in clinical aspect ...
written 22 days ago by
Vijay Lakhujani ♦ 3.5k
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125
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Comment:
C: What is Genome-sequencing?
... If that's the case, then OP needs to re frame the question. ...
written 24 days ago by
Vijay Lakhujani ♦ 3.5k
Latest awards to Vijay Lakhujani
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22 days ago,
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For What are some good resources to learn shell script for NGS pipeline development?
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For A: Draw circular genome with selected features
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For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
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For A: Draw circular genome with selected features
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8 weeks ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
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For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
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For What are some good resources to learn shell script for NGS pipeline development?
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For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
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For What are some good resources to learn shell script for NGS pipeline development?
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For Samtools flagstat number of reads do not match actual total number of reads.
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For Samtools flagstat number of reads do not match actual total number of reads.
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For Samtools flagstat number of reads do not match actual total number of reads.
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