User: Vijay Lakhujani

gravatar for Vijay Lakhujani
Vijay Lakhujani1.4k
Reputation:
1,440
Status:
Trusted
Location:
India
Twitter:
vijay_lakhujani
Scholar ID:
Google Scholar Page
Last seen:
5 hours ago
Joined:
1 year, 7 months ago
Email:
l*************@gmail.com

☛ I am a DBT Certified bioinformatician (BINC, Govt. Of India) with deep interest in Genomics and next generation sequencing technologies. I have enjoyed my industry experience of 6.5+ years working on design, implementation and analysis of microarray data and high-throughput NGS data.

☛ I love the idea of automation and my passion for programming has motivated me to learn some of the top-notch programming languages like PERL, Python, bash and R. I have developed several programs required to analyze, manipulate or automate key steps in sequencing data analysis. Programming is so much fun!

☛ I am an avid learner and I often try to engage myself in online courses because I strongly believe that in a quickly evolving domain like bioinformatics, the only way to keep up the pace with is to keep learning, both within and outside the job hours.

☛ I support the concept of “open-source” and try to share as much as knowledge regarding bioinformatics and its scope with students. I have been formally certified as “lecturer” (CSIR-NET-JRF+LS, Govt. of India) and involved in providing bioinformatics knowledge sharing sessions and cross functional trainings to technical teams and graduate students.

☛ You can connect with me via gmail, LinkedIn or over a call to discuss ideas or if you need any guidance. Here are my contact details.

✉  lakhujanivijay@gmail.com
✆  +91 966 22 55 385

▣ Linkedin: https://in.linkedin.com/in/lakhujanivijay

❝Everybody in this country should learn to program a computer, because it teaches you how to think❞
✍ Steve Jobs

 

Posts by Vijay Lakhujani

<prev • 308 results • page 1 of 31 • next >
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Comment: C: samtools view -bT hg19.fa OR -bhs -q 30 -F1548 A.sam > A.bam, which one is bett
... From samtools help -f INT only include reads with all of the FLAGs in INT present [0] -F INT only include reads with none of the FLAGS in INT present [0] -q INT only include reads with mapping quality >= INT [0] From [this][1] link ![samtools flags explained][2] `-q 30` - in ...
written 13 hours ago by Vijay Lakhujani1.4k
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Answer: A: Where can I get fastq sequence files of length 150 and more.
... This is a very basic requirement and a lot of tools are available to simulate artificial reads from the genome under question. More interestingly, you can define the number, length and quality of reads also. One such well documented program ( **ArtificialFastqGenerator** )is [here][1] [Here][2] is ...
written 14 hours ago by Vijay Lakhujani1.4k
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Answer: A: samtools view -bT hg19.fa OR -bhs -q 30 -F1548 A.sam > A.bam, which one is bett
... **Step 1:** Check if the SAM file contains headers: head A.sam The first 10 lines on your terminal after typing "head test.sam" will be lines starting with the "@" symbol which is an indicator for a header line. If you don't see lines starting with the "@" sign, the header information is most ...
written 16 hours ago by Vijay Lakhujani1.4k
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Comment: C: perl script not giving output
... Share the contents of `testID` so that I can run the same at my end and troubleshoot. Will be happy to assist ...
written 17 hours ago by Vijay Lakhujani1.4k
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Comment: C: Research Bazaar 2018
... Definitely [Satya][1] Let's discuss on this when we meet next month [1]: https://www.biostars.org/u/24630/ ...
written 18 hours ago by Vijay Lakhujani1.4k
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Comment: C: Research Bazaar 2018
... thanks man! I will try to contact them. ...
written 18 hours ago by Vijay Lakhujani1.4k
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Answer: A: parsing fastq files in python
... **Here you go:** # importing os module import os # store the path of current directory in the variable 'cwd' cwd = os.getcwd() # loop over all files for files in os.listdir(cwd): # check if file is fastq by extension if files.endswith(".fastq"): # ...
written 18 hours ago by Vijay Lakhujani1.4k
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Answer: A: Research Bazaar 2018
... This seems like a fantastic idea I must say. Looks like this happens in a limited set of countries. What does it take to be a part of it and contribute? Also, is there any possibility to initiate in India. Disclaimer: I am from India ;) ...
written 19 hours ago by Vijay Lakhujani1.4k
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Answer: A: NGS Project report formate for a Post graduate level student.
... A typical scientific experiment will contain following aspects 1. A specific and well written and to the point objective. This will essentially have the answer to the question- what made you work on this project. 2. You can include a summary or abstract mentioning what is already known and what h ...
written 1 day ago by Vijay Lakhujani1.4k
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Answer: A: iterating through list of tuples #python
... Here is a solution, I hope this helps pos = [66905851, 66905852] cigar = [[(0, 117), (3, 29773), (0, 253), (3, 1325), (0, 145)], [(0, 116), (2, 1), (3, 3419), (0, 327), (3, 21529), (0, 286), (2, 1), (0, 1), (3, 4210), (0, 253), (3, 1325), (0, 145)]] final1,final2,c,d=[],[],[],[] ...
written 3 days ago by Vijay Lakhujani1.4k

Latest awards to Vijay Lakhujani

Teacher 3 days ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Voter 17 days ago, voted more than 100 times.
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 9 weeks ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 3 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 4 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 5 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 5 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Guru 5 months ago, received more than 100 upvotes.
Scholar 5 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar 5 months ago, created an answer that has been accepted. For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 7 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Supporter 11 months ago, voted at least 25 times.
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: how to extract particular regions of a sequence from fasta file if its range fo
Centurion 11 months ago, created 100 posts.
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 12 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Scholar 13 months ago, created an answer that has been accepted. For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Draw circular genome with selected features

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