User: Vijay Lakhujani
Vijay Lakhujani • 1.1k
- Reputation:
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- India
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- vijay_lakhujani
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- Last seen:
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- 1 year, 3 months ago
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☛ Genomics Domain Specialization: NET-JRF, GATE, BINC qualified.
☛ Certified bioinformatician (by Dept. of Biotechnology, Govt. of India.
☛ 6+ years of experience in Genomics industry (specially NGS data analysis).
☛ Skilled in working with commercial/open source software for microarray and NGS end-to-end data analysis, from raw sequencing data to variant reporting. Whole genome,transcriptome, 16S rRNA NGS data analysis, de novo assembly tools & algorithms, assembly validation and downstream data processing.
☛ Sound knowledge of open source tools for data visualization and interpretation. Comfortable with working on Linux platform & HPC.
Posts by Vijay Lakhujani
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... A similar discussion could be found [here][1]
According to [Picard FAQs,][2] samtools rmdup do not remove interchromosomal duplicates while picard MarkDuplicates does!
[1]: https://www.biostars.org/p/3917/
[2]: http://broadinstitute.github.io/picard/faq.html ...
written 4 days ago by
Vijay Lakhujani • 1.1k
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... Blast2GO is a good and popular option as suggested by [Chirag][1]. It's a paid commercial software. An open source alternative would be to perform standalone blastp -> get the description. Use the hit accession to derive the GO ontologies using [UniprotKb][2] by retrieving the UniprotKB ids from ...
written 5 days ago by
Vijay Lakhujani • 1.1k
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... Hi Cristina
No, the problem remains the same. What is your organism? What files do you have?
~Vijay ...
written 11 days ago by
Vijay Lakhujani • 1.1k
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Comment:
C: How to Fix Error in snpeff
... It says, `ERROR_CHROMOSOME_NOT_FOUND 285197`
Can you please check your vcf for this? ...
written 12 days ago by
Vijay Lakhujani • 1.1k
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Comment:
C: local blastp against NR database
... Hi [genomax][1],
Can you please direct me to appropriate resources for installing and implementing job scheduler? I would like to learn more about it.
[1]: https://www.biostars.org/u/18713/ ...
written 18 days ago by
Vijay Lakhujani • 1.1k
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Comment:
C: local blastp against NR database
... Hi Chirag,
Thanks for asking that question; kind of similar doubt I am in. There is a nice post on [GNU parallel][1] which is a better approach and I am yet to implement it. You can give it a try.
However, it is unusual that there is no output in 24 hours. Though that depends on your query size bu ...
written 19 days ago by
Vijay Lakhujani • 1.1k
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1
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... A black outline indicates that the selected read has no mate. Source [here][1]
[1]: https://software.broadinstitute.org/software/igv/v1.4 ...
written 20 days ago by
Vijay Lakhujani • 1.1k
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447
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... I don't know if this helps but what I usually do is that I enable desktop notification on my PC; something like this:
![A desktop notification on the top right corner][1]
This notification pops up; say every hour and tells me how many of the query sequences have been blasted so far (I already know ...
written 21 days ago by
Vijay Lakhujani • 1.1k
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... > Does anyone know about benefits of BINC certification exam ( held by
> Pondichery University, India) ??
From BINC [FAQs][1]
"*While anyone with a Bachelors degree in Science, Medicine, Engineering etc. is eligible to appear in the BINC examination and receive a certificate, the fellowship ...
written 4 weeks ago by
Vijay Lakhujani • 1.1k
0
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152
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... You might try out [Bridger][1]
[1]: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0596-2 ...
written 4 weeks ago by
Vijay Lakhujani • 1.1k
Latest awards to Vijay Lakhujani
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12 days ago,
created an answer that has been accepted.
For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
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6 weeks ago,
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For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
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For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
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8 weeks ago,
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For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
Scholar
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For A: Just complement or reverse sequence fom Biopython, but not reverse-complement on
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9 weeks ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
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12 weeks ago,
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For A: Draw circular genome with selected features
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For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
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For A: Draw circular genome with selected features
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For C: how to extract particular regions of a sequence from fasta file if its range fo
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8 months ago,
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For A: Draw circular genome with selected features
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For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: Draw circular genome with selected features
Scholar
10 months ago,
created an answer that has been accepted.
For A: How do i should proceed with 16S rRNA amplicon sequencing data from Illumina MiS
Teacher
10 months ago,
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For A: Draw circular genome with selected features
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For A: Draw circular genome with selected features
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