User: Zak

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Zak110
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7 years, 8 months ago
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8 years, 3 months ago
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Posts by Zak

<prev • 7 results • page 1 of 1 • next >
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(Closed) Genome Analysis
... Hello friends I am looking for some sort of protocol for genome analysis ,starting with assembly of contigs. i have a nucleotide sequencing data some fungal species and now im interested in performing a genome analysis of the data,i have a prior knowledge of protein anlaysis but i have never perf ...
genome analysis written 7.7 years ago by Zak110 • updated 7.7 years ago by Pierre Lindenbaum124k
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(Closed) Genome Analysis
... Hello friends I am looking for some sort of protocol for genome analysis ,starting with assembly of contigs. i have a nucleotide sequencing data some fungal species and now im interested in performing a genome analysis of the data,i have a prior knowledge of protein anlaysis but i have never perf ...
genome analysis written 7.7 years ago by Zak110
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Answer: A: Protein Structure Reconstruction
... Apart from modeller, you can use Swiss model,Phyre ,these are web based servers to model protein. ...
written 8.1 years ago by Zak110
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Homology Model Validation
... Dear all, i have modelled a protein structure using Modeller and performed loop refinement,but i am having problem validating my structure through SAVES, Procheck's Ramachandran plot shows warning sign (plot shows that 95% residues lie in core region,4.7 in allowed,.02 in gener and 0 in disall.) ...
homology structure written 8.1 years ago by Zak110 • updated 8.1 years ago by João Rodrigues2.5k
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Structure Based Drug Designing When Active Site Is Known But No Known Inhibitors Available Present ?
... I am doing a project on structure based drug designing , and i have a protein-protein interaction site for which no known inhibitors are known and there are no related proteins with inhibitors. What should i do ?? can i use random drug like molecules from zinc database?? I would also like to know ...
ppi drug docking written 8.2 years ago by Zak110 • updated 2.1 years ago by Biostar ♦♦ 20
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Comment: C: Homology Modelling Steps
... thanks chupvl :D for my second i meant that ramachandran plot is according to psi/phi values if we are changing them ,won't this affect the structure... ...
written 8.3 years ago by Zak110
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Homology Modelling Steps
... Hi all I have recently started a training in homology modeling using modeller, I modelled a protein structure and performed model validation through SAVES , Procheck showed that some of the amino acid residues were in disallowed region.. To correct it i was told to build loop using spdbv tool so th ...
homology modeling protein written 8.3 years ago by Zak110 • updated 8.3 years ago by Anuraj Nayarisseri750

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