User: avolkov

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avolkov10
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Posts by avolkov

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Comment: C: velvetg problem after Threading through reads
... Thanks for the answer. The problem is that there is barely any disk activity. But i also believe that this problem is memory-related. Still, it looks like the software is not doing anything, since the message about the next step is usually there instantly after threading. For now i stopped the assem ...
written 2.8 years ago by avolkov10
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velvetg problem after Threading through reads
... Hi all! I am de novo assembling a plant transcriptome from 430M quality-trimmed 2x100 Illumina reads on a 24 CPU 156 GB RAM machine using velvet. Everything was fine until this velvetg step: ..... [16974.644928] Threading through reads 179000000 / 430800790 [17586.290922] === Threade ...
de novo rna-seq velvet written 2.8 years ago by avolkov10 • updated 2.8 years ago by Antonio R. Franco4.0k

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