User: bxia

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bxia90
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Posts by bxia

<prev • 89 results • page 1 of 9 • next >
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how do I know there is alternative transcript switch in RNA-seq
... I know cuffdiff2 could detect transcripts expression level. But what is the criteria that I could say that there is transcript switch? Let's say two transcript, A, B, and two conditions. What is the best way to conclude there is a switch, is there a gold standard? Thanks, ...
rna-seq written 8 weeks ago by bxia90 • updated 11 days ago by Biostar ♦♦ 20
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Comment: C: How to know a RNA-seq is polyA or total-RNA-seq in GEO?
... So there is no way to figure them out without mapping result, right? ...
written 10 weeks ago by bxia90
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How to know a RNA-seq is polyA or total-RNA-seq in GEO?
... How to know a RNA-seq is polyA or total-RNA-seq in GEO? Does GEO require that kind of meta data during submission? Thanks, ...
geo rna-seq written 11 weeks ago by bxia90 • updated 11 weeks ago by Devon Ryan70k
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Comment: C: bed format, START always bigger than END, no matter which strand?
... That is a good idea. Thanks ...
written 12 weeks ago by bxia90
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Comment: C: bed format, START always bigger than END, no matter which strand?
... I am trying to convert .bowtie file generated by bowtie to BED ...
written 12 weeks ago by bxia90
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bed format, START always bigger than END, no matter which strand?
... I am trying to convert bowtie to bed format. in bowtie, it only provide start position, if the strand is '-', is that the START in bowtie is actually the left of the reads, no matter which strand? And in bed format, START always bigger than END, no matter which strand? For example, in bowtie I ...
bed bowtie written 12 weeks ago by bxia90 • updated 12 weeks ago by Alex Reynolds20k
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Comment: C: Encode http 403 error, I am being blocked?
... yeah...it is working for me too...maybe the block is temporarily? ...
written 3 months ago by bxia90
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Encode http 403 error, I am being blocked?
... I am receiving 403 error when I tried to download fastq from Encode. Does that mean I am being blocked? Is there anyone could download the data from encode right now? Thanks, ...
rna-seq written 3 months ago by bxia90
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Comment: C: fastq-dump timeout exhausted error
... ok, I see, that will make sense Thanks ...
written 3 months ago by bxia90
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Comment: C: fastq-dump timeout exhausted error
... fastq-dump --split-3 SRR998480 I am wondering whether it is really using the local downloaded SRA ...
written 3 months ago by bxia90

Latest awards to bxia

Popular Question 4 months ago, created a question with more than 1,000 views. For how do I know the breast cancer subtype based on TCGA clinical data
Student 8 months ago, asked a question with at least 3 up-votes. For HTSEQ count is the raw count, not RPKM or FPKM, right?
Supporter 9 months ago, voted at least 25 times.

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