User: bxia

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bxia80
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b***@g.clemson.edu

Posts by bxia

<prev • 88 results • page 1 of 9 • next >
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Comment: C: How to know a RNA-seq is polyA or total-RNA-seq in GEO?
... So there is no way to figure them out without mapping result, right? ...
written 18 days ago by bxia80
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How to know a RNA-seq is polyA or total-RNA-seq in GEO?
... How to know a RNA-seq is polyA or total-RNA-seq in GEO? Does GEO require that kind of meta data during submission? Thanks, ...
geo rna-seq written 19 days ago by bxia80 • updated 19 days ago by Devon Ryan68k
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Comment: C: bed format, START always bigger than END, no matter which strand?
... That is a good idea. Thanks ...
written 4 weeks ago by bxia80
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Comment: C: bed format, START always bigger than END, no matter which strand?
... I am trying to convert .bowtie file generated by bowtie to BED ...
written 4 weeks ago by bxia80
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bed format, START always bigger than END, no matter which strand?
... I am trying to convert bowtie to bed format. in bowtie, it only provide start position, if the strand is '-', is that the START in bowtie is actually the left of the reads, no matter which strand? And in bed format, START always bigger than END, no matter which strand? For example, in bowtie I ...
bed bowtie written 4 weeks ago by bxia80 • updated 4 weeks ago by Alex Reynolds19k
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Comment: C: Encode http 403 error, I am being blocked?
... yeah...it is working for me too...maybe the block is temporarily? ...
written 5 weeks ago by bxia80
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Encode http 403 error, I am being blocked?
... I am receiving 403 error when I tried to download fastq from Encode. Does that mean I am being blocked? Is there anyone could download the data from encode right now? Thanks, ...
rna-seq written 5 weeks ago by bxia80
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Comment: C: fastq-dump timeout exhausted error
... ok, I see, that will make sense Thanks ...
written 7 weeks ago by bxia80
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Comment: C: fastq-dump timeout exhausted error
... fastq-dump --split-3 SRR998480 I am wondering whether it is really using the local downloaded SRA ...
written 7 weeks ago by bxia80
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fastq-dump timeout exhausted error
... Hi, I got this error message from fastq-dump: fastq-dump.2.8.0 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) but I have SRA downloaded in the local folder. I wonder whether I can ignore th ...
sra written 7 weeks ago by bxia80

Latest awards to bxia

Popular Question 3 months ago, created a question with more than 1,000 views. For how do I know the breast cancer subtype based on TCGA clinical data
Student 6 months ago, asked a question with at least 3 up-votes. For HTSEQ count is the raw count, not RPKM or FPKM, right?
Supporter 7 months ago, voted at least 25 times.

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