User: bxia

gravatar for bxia
bxia70
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12 months ago
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b***@g.clemson.edu

Posts by bxia

<prev • 83 results • page 1 of 9 • next >
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Comment: C: Encode http 403 error, I am being blocked?
... yeah...it is working for me too...maybe the block is temporarily? ...
written 4 days ago by bxia70
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Encode http 403 error, I am being blocked?
... I am receiving 403 error when I tried to download fastq from Encode. Does that mean I am being blocked? Is there anyone could download the data from encode right now? Thanks, ...
rna-seq written 4 days ago by bxia70
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Comment: C: fastq-dump timeout exhausted error
... ok, I see, that will make sense Thanks ...
written 18 days ago by bxia70
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Comment: C: fastq-dump timeout exhausted error
... fastq-dump --split-3 SRR998480 I am wondering whether it is really using the local downloaded SRA ...
written 18 days ago by bxia70
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fastq-dump timeout exhausted error
... Hi, I got this error message from fastq-dump: fastq-dump.2.8.0 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) but I have SRA downloaded in the local folder. I wonder whether I can ignore th ...
sra written 18 days ago by bxia70
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paired sample in ENCODE RNA-seq and ChIP-seq
... How do I confirm that RNA-seq and ChIP-seq are actually from same sample for encode? I found many RNA-seq and ChIP-seq for same biosample term are actually from different sample. Is there an identifier for encode to pair RNA-seq and ChIP-seq? Thanks, ...
encode written 19 days ago by bxia70
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Is there a function similar with qblast to blast the SeqIO.parse object? Biopython Blastn
... Is there a way to blast multiple sequences with biopython qblast at same time instead of just using for loop the SeqIO.parse resutl? Thanks, ...
blast written 24 days ago by bxia70
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Blast multiple sequences with Biopython qblast
... Is there a way to blast multiple sequences with biopython qblast at same time instead of just using for loop? Thanks, ...
blast written 24 days ago by bxia70
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HTseq report 80% of reads no feature
... Is this number is too large for a mice RNA-seq? total reads mapped is 12 M from tophat2 __no_feature 10556702 __ambiguous 26522 __too_low_aQual 0 __not_aligned 0 __alignment_not_unique 21173785 ...
rna-seq written 5 weeks ago by bxia70 • updated 5 weeks ago by Devon Ryan65k
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Comment: C: Is there a way that I can perform blast through NCBI from my program?
... orz..didn't realize there is a mark except the thumb.. ...
written 5 weeks ago by bxia70

Latest awards to bxia

Popular Question 8 weeks ago, created a question with more than 1,000 views. For how do I know the breast cancer subtype based on TCGA clinical data
Student 5 months ago, asked a question with at least 3 up-votes. For HTSEQ count is the raw count, not RPKM or FPKM, right?
Supporter 5 months ago, voted at least 25 times.

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