User: bxia

gravatar for bxia
bxia70
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10 months, 1 week ago
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b***@g.clemson.edu

Posts by bxia

<prev • 70 results • page 1 of 7 • next >
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Does MACS2 or MACS14 perform total reads normalization?
... Does MACS2 or MACS14 perform total reads normalization? I didn't see them to discuss about it. Just want to make sure the default parameters doesn't do the total reads normalization. Thanks, ...
chip-seq written 10 days ago by bxia70 • updated 8 days ago by Biostar ♦♦ 10
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Comment: C: bowtie no reported alignment?
... Thanks for your reply, it turns out to be a server error. Thanks again ...
written 10 days ago by bxia70
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bowtie no reported alignment?
... bowtie no reported alignment? I used the same command before, but this time.. there is no reported alignment.. Anyone have the same situation before?? ...
chip-seq written 11 days ago by bxia70
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Comment: C: Do I need to only keep exon in gene GTF when I run Cuffdiff?
... I am completely not sure, I just find some command and realize people use exon only GTF to map. Haven't try that yet. ...
written 6 weeks ago by bxia70
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Do I need to only keep exon in gene GTF when I run Cuffdiff?
... Do I need to only keep exon in gene GTF when I run Cuffdiff? if I don't remove CDS etc,., will it cause problem? ...
rna-seq written 6 weeks ago by bxia70 • updated 6 weeks ago by Petr Ponomarenko1.2k
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ATCC Cell lines information, Database access
... Is there a way to access the ATCC database programmatically? like back door url to only return the ATCC ID? Or return all the search result as a json/txt or table format? ...
rna-seq written 7 weeks ago by bxia70
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Comment: C: The most popular Alternative to David?
... Hi, I use 'update' to update the db. Here is the error message: Illegal division by zero at /GeneSCF/class/lib/List/Vectorize/lib/List.pl line 599, chunk 1. Tue Jan 31 10:50:58 CST 2017 finished processing Here is my command: /geneSCF -m=update -i=up.txt -t=sym -db=KEGG -o=./ ...
written 8 weeks ago by bxia70 • updated 8 weeks ago by genomax224k
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Comment: C: The most popular Alternative to David?
... Thanks, looks like the original download of geneSCF doesn't include any db except from human. ...
written 8 weeks ago by bxia70
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Comment: C: The most popular Alternative to David?
... it is not. I have multiple data from different organisms, just realized one is from zebrafish.. I know David 6.8 could do zebrafish, so that is the question come from. ...
written 8 weeks ago by bxia70
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Comment: C: The most popular Alternative to David?
... I tried it, it throw me an error as "Error opening in database file at /home/tmhbxx3/tools/GeneSCF/class/functional_class3.pl line 97." Any idea? Thanks ...
written 8 weeks ago by bxia70

Latest awards to bxia

Student 3 months ago, asked a question with at least 3 up-votes. For HTSEQ count is the raw count, not RPKM or FPKM, right?
Supporter 4 months ago, voted at least 25 times.

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