User: bxia

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bxia140
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Posts by bxia

<prev • 104 results • page 1 of 11 • next >
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Comment: C: How to know favorite and unfavorite for survival analysis programmly?
... favorite survival means high exp patient will live longer unfavorite means high exp patient will die quicker ...
written 9 months ago by bxia140
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How to know favorite and unfavorite for survival analysis programmly?
... How to know favorite and unfavorite for survival analysis programmly? I know p-value is calculated by log-rank test, but how to know it is favorite or unfavorite by code? ...
rna-seq written 9 months ago by bxia140 • updated 9 months ago by kristoffer.vittingseerup1.6k
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edgeR 2GB table
... I have a table with 10000 htseq samples...the file size is 1.7Gb... how to analyze it with edgeR? ...
rna-seq written 10 months ago by bxia140
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Comment: C: how to convert SGD standard name to SGD systematic ID?
... Yes, for example, I have a gene name, **RPL7B**, which I can find the SGD systematic id by search in there website as **YPL198W** But I can't find a file containing theses two kinds of IDs in downloads section of SGD. Have anyone known the table download info in SGD database? Thanks, ...
written 11 months ago by bxia140
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how to convert SGD standard name to SGD systematic ID?
... does SGD have a table to map theses two names? I didn't find one in their download database.. ...
sgd written 11 months ago by bxia140
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How does WGS normalization perform between samples
... I am currently using whole genome sequencing to identify structure variation (SV) I wonder whether I need to perform normalization between the samples. For example, 2-micron 10 1 N . . SVTYPE=DUP;STRANDS=-+:155;SVLEN=6307;END=6317;CIPOS=0,0;CIEND=0,0;CIPOS95=0,0;CIEND95=0,0;SU=155;PE=0;SR=155 G ...
whole genome sequencing written 12 months ago by bxia140
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Comment: C: LUMPY SV call without quality score
... Thanks for your explanation. I have read the VCF format description, I thought it will tell me the details of the changes.. ...
written 12 months ago by bxia140
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Comment: C: LUMPY SV call without quality score
... But the other problem I have is the REF column are all N, although it tells me it is DEL or INDEL or something else.. ...
written 12 months ago by bxia140
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Comment: C: LUMPY SV call without quality score
... I checked the other people's post, they have it and all the REF column are shown as N.. ...
written 12 months ago by bxia140
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LUMPY SV call without quality score
... I am using LUMPY to call structure variation, but the problem is all the quality score returned by LUMPY is marked as '.' Is it due to low sequencing depth? ...
wgs written 12 months ago by bxia140

Latest awards to bxia

Popular Question 10 months ago, created a question with more than 1,000 views. For FastQC after read sequences, nothing happened...
Popular Question 10 months ago, created a question with more than 1,000 views. For which annotation I should for RNA-seq? Ensembl, UCSC or refseq?
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Popular Question 11 months ago, created a question with more than 1,000 views. For FastQC after read sequences, nothing happened...
Centurion 11 months ago, created 100 posts.
Popular Question 12 months ago, created a question with more than 1,000 views. For FastQC after read sequences, nothing happened...
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Popular Question 12 months ago, created a question with more than 1,000 views. For Interpretation of TCGA clinical data
Popular Question 15 months ago, created a question with more than 1,000 views. For which annotation I should for RNA-seq? Ensembl, UCSC or refseq?
Popular Question 15 months ago, created a question with more than 1,000 views. For HTSEQ count is the raw count, not RPKM or FPKM, right?
Popular Question 15 months ago, created a question with more than 1,000 views. For how do I know the breast cancer subtype based on TCGA clinical data
Popular Question 20 months ago, created a question with more than 1,000 views. For how do I know the breast cancer subtype based on TCGA clinical data
Popular Question 24 months ago, created a question with more than 1,000 views. For how do I know the breast cancer subtype based on TCGA clinical data
Student 2.3 years ago, asked a question with at least 3 up-votes. For HTSEQ count is the raw count, not RPKM or FPKM, right?
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