User: cristina_sabiers

Reputation:
40
Status:
New User
Location:
Spain
Last seen:
1 week ago
Joined:
1 year, 5 months ago
Email:
c*****************@gmail.com

Posts by cristina_sabiers

<prev • 166 results • page 1 of 17 • next >
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why I miss genes in the annotations?
... Hi! Hope someone can clarify me this I downloaded the gtf annotation from http://www.gencodegenes.org/releases/26lift37.html I generated my own bed file for annotate just the gen name on my vcf file, the fact is that I miss a few genes for example this one that don't appear (it does with annovar ...
annotat written 3 months ago by cristina_sabiers40
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Comment: C: esearch problem downloading files
... thank you so much! worked with your code. Thanks ...
written 4 months ago by cristina_sabiers40
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Comment: C: esearch problem downloading files
... Thank genomax, must be st wrong in the installation or in some crazy way they bann me, will try in my other O.S ...
written 4 months ago by cristina_sabiers40
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Comment: C: esearch problem downloading files
... I do something wrong? its like I go to restricted area? Thanks for the help ...
written 4 months ago by cristina_sabiers40
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esearch problem downloading files
... Hi all! Long time...I got pretty bussy learning Pandas to work with dataframes in a decent way , just miss learn more deep python and unix comands....step by step I try to do manually mapping virus like VIP pipeline just to learn how they do, the case is get stock at this step, on db_instaler.sh ...
virus written 4 months ago by cristina_sabiers40 • updated 4 months ago by Istvan Albert ♦♦ 74k
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Comment: C: GEN CLUSTERIN question
... no...thank you so much, I will tell her. ...
written 9 months ago by cristina_sabiers40
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GEN CLUSTERIN question
... Im helping a friend who is studing the clusterin gen http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000120885;r=8:27596917-27615031;t=ENST00000316403 We have a question, when we check the CLU-001 CLU-003 CLU 004 they have different length but when we look at the amino acid th ...
sequencing written 9 months ago by cristina_sabiers40 • updated 9 months ago by genomax37k
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Answer: A: Viral load estimation from WXS (whole exome sequencing) data
... I don't know if this help, but maybe you want to take a look http://www.actrec.gov.in/pi-webpages/AmitDutt/HPVdetector/hpvdetectoruserguid.html ...
written 9 months ago by cristina_sabiers40
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Uniprot activ site annotate on intronic region?
... mmm I dont know if I do something wrong but... this is from data base of uniprot_: chr11 4123342 4123345 P23921 0 + 4123342 4123345 255,102,102 1 3 0 . **Proton acceptor.** ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_beds/UP ...
uniptrot written 9 months ago by cristina_sabiers40
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Add "ALL" uniprot bed files to vcf files
... Thanks to the help of all from this forum I know how to add the bed files from uniprot to my vcf file ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_beds/ I use this code bcftools annotate \ -a ACTIV.bed. ...
vcf bed uniprot written 9 months ago by cristina_sabiers40

Latest awards to cristina_sabiers

Popular Question 3 months ago, created a question with more than 1,000 views. For Compare 4 vcf files with vcftools
Popular Question 3 months ago, created a question with more than 1,000 views. For SAM file wrong? help with validatesamfile
Popular Question 9 months ago, created a question with more than 1,000 views. For SAM file wrong? help with validatesamfile
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Supporter 15 months ago, voted at least 25 times.
Rising Star 15 months ago, created 50 posts within first three months of joining.

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