User: cristina_sabiers

Reputation:
40
Status:
New User
Location:
Spain
Last seen:
1 year, 3 months ago
Joined:
2 years, 8 months ago
Email:
c*****************@gmail.com

Posts by cristina_sabiers

<prev • 166 results • page 1 of 17 • next >
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why I miss genes in the annotations?
... Hi! Hope someone can clarify me this I downloaded the gtf annotation from http://www.gencodegenes.org/releases/26lift37.html I generated my own bed file for annotate just the gen name on my vcf file, the fact is that I miss a few genes for example this one that don't appear (it does with annovar ...
annotat written 19 months ago by cristina_sabiers40
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Comment: C: esearch problem downloading files
... thank you so much! worked with your code. Thanks ...
written 19 months ago by cristina_sabiers40
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Comment: C: esearch problem downloading files
... Thank genomax, must be st wrong in the installation or in some crazy way they bann me, will try in my other O.S ...
written 19 months ago by cristina_sabiers40
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Comment: C: esearch problem downloading files
... I do something wrong? its like I go to restricted area? Thanks for the help ...
written 19 months ago by cristina_sabiers40
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esearch problem downloading files
... Hi all! Long time...I got pretty bussy learning Pandas to work with dataframes in a decent way , just miss learn more deep python and unix comands....step by step I try to do manually mapping virus like VIP pipeline just to learn how they do, the case is get stock at this step, on db_instaler.sh ...
virus written 19 months ago by cristina_sabiers40 • updated 19 months ago by Istvan Albert ♦♦ 79k
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Comment: C: GEN CLUSTERIN question
... no...thank you so much, I will tell her. ...
written 2.0 years ago by cristina_sabiers40
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GEN CLUSTERIN question
... Im helping a friend who is studing the clusterin gen http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000120885;r=8:27596917-27615031;t=ENST00000316403 We have a question, when we check the CLU-001 CLU-003 CLU 004 they have different length but when we look at the amino acid th ...
sequencing written 2.0 years ago by cristina_sabiers40 • updated 2.0 years ago by genomax62k
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Answer: A: Viral load estimation from WXS (whole exome sequencing) data
... I don't know if this help, but maybe you want to take a look http://www.actrec.gov.in/pi-webpages/AmitDutt/HPVdetector/hpvdetectoruserguid.html ...
written 2.0 years ago by cristina_sabiers40
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Uniprot activ site annotate on intronic region?
... mmm I dont know if I do something wrong but... this is from data base of uniprot_: chr11 4123342 4123345 P23921 0 + 4123342 4123345 255,102,102 1 3 0 . **Proton acceptor.** ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_beds/UP ...
uniptrot written 2.0 years ago by cristina_sabiers40
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Add "ALL" uniprot bed files to vcf files
... Thanks to the help of all from this forum I know how to add the bed files from uniprot to my vcf file ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_beds/ I use this code bcftools annotate \ -a ACTIV.bed. ...
vcf bed uniprot written 2.0 years ago by cristina_sabiers40

Latest awards to cristina_sabiers

Popular Question 19 months ago, created a question with more than 1,000 views. For Compare 4 vcf files with vcftools
Popular Question 19 months ago, created a question with more than 1,000 views. For SAM file wrong? help with validatesamfile
Popular Question 24 months ago, created a question with more than 1,000 views. For SAM file wrong? help with validatesamfile
Centurion 2.4 years ago, created 100 posts.
Supporter 2.5 years ago, voted at least 25 times.
Rising Star 2.6 years ago, created 50 posts within first three months of joining.

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