User: elsayedhegazy

gravatar for elsayedhegazy
Reputation:
20
Status:
New User
Location:
Website:
https://eg.linkedin.co...
Twitter:
@elsayedhejazy
Last seen:
1 year ago
Joined:
2 years, 12 months ago
Email:
e************@gmail.com

Posts by elsayedhegazy

<prev • 10 results • page 1 of 1 • next >
0
votes
2
answers
796
views
2
answers
Comment: C: VCF mining & interpretation tools (hg38 build)
... Hail seems great but i need standalone tool not based on Apache Spark any other recommendations ? ...
written 20 months ago by elsayedhegazy20
1
vote
2
answers
1.3k
views
2
answers
Answer: A: pathway analysis tools
... If you have the target genes you can use DAVID -- https://david.ncifcrf.gov/ or FunRich -- http://www.funrich.org/ If not you can get the target genes using mirWalk2 -- http://zmf.umm.uni-heidelberg.de/apps/zmf/mirwalk2/miRretsys-self.html Regards elsayed ...
written 20 months ago by elsayedhegazy20
2
votes
2
answers
796
views
2
answers
VCF mining & interpretation tools (hg38 build)
... i need recommendation for VCF mining & interpretation tools (hg38 build) like gemini but with hg38 support **Kindly list any tools used in variant disease association and variant phenotype association or any tools of VCF statistics and analysis.** Regards elsayed ...
vcf annotation clinvar snp mining written 20 months ago by elsayedhegazy20 • updated 16 months ago by Biostar ♦♦ 20
0
votes
5
answers
5.9k
views
5
answers
Answer: A: Gemini: Integrative Exploration Of Genetic Variation And Genome Annotations
... **Is there any way to make gemini work with hg38 ?** ...
written 20 months ago by elsayedhegazy20
0
votes
0
answers
727
views
0
answers
Comment: C: Gemini with hg38
... Thanks a million Dr Pierre Kindly if you know any other tools like gemini let me know i need VCF mining tools support hg38 ...
written 20 months ago by elsayedhegazy20
0
votes
0
answers
727
views
0
answers
Gemini with hg38
... Kindly let me know if any one knows a straight forward way to run gemini with hg38 also if you have a good tutorials to use gemini. If you have any other tools like gemini with hg38 support list it here Thanks a million elsayed ...
gemini vcf ngs next-gen annotation written 20 months ago by elsayedhegazy20 • updated 20 months ago by RamRS21k
0
votes
2
answers
2.1k
views
2
answers
Comment: C: Copy Number Variation Steps (CNVs) - detection step by step
... **Thanks a million medhat** i will explore these links ...
written 2.9 years ago by elsayedhegazy20
0
votes
2
answers
2.1k
views
2
answers
Comment: C: Copy Number Variation Steps (CNVs) - detection step by step
... Yes but with explanation of steps some like from FASTQ or VCF file we search for something after that we filter it using something **if you have one script code show all steps you are most welcome to post it here** Thanks a millions ...
written 2.9 years ago by elsayedhegazy20
0
votes
2
answers
2.1k
views
2
answers
Comment: C: Copy Number Variation Steps (CNVs) - detection step by step
... Thanks Chirag, Still little bit confused these steps to run tools in proper way. **My need is algorithm steps as concepts or theoretical steps - How to know this region contain CNV and how to extract it** ...
written 2.9 years ago by elsayedhegazy20
5
votes
2
answers
2.1k
views
2
answers
Copy Number Variation Steps (CNVs) - detection step by step
... Dear friends, I need to know the detailed steps of CNVs detection from NGS data (FASTQ , BAM, SAM or VCF). If i have one of these files what can i do to extract the copy number variation. **i am not talking about tool names i need the algorithm steps.** Regards, elsayed ...
genome ngs sequence snp cnvs written 2.9 years ago by elsayedhegazy20 • updated 2.9 years ago by Medhat8.3k

Latest awards to elsayedhegazy

Popular Question 15 months ago, created a question with more than 1,000 views. For Copy Number Variation Steps (CNVs) - detection step by step

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 996 users visited in the last hour