User: LJ

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LJ180
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Posts by LJ

<prev • 29 results • page 1 of 3 • next >
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Comment: C: using a likelihood ratio test to Compare effect sizes across phenotypes
... no one has an answer???? ...
written 2.3 years ago by LJ180
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calculate kinship in SPAGeD
... Hi all, i have a set of SNP data for some samples (diploid species), and I want to calculate the kinship using SPAGeD software.So i how do i set the SNP data form to calculate kinship? And the following data is a example data. So the first line includes(# number of individuals; #number of categories ...
gwas kinship snp written 2.4 years ago by LJ180
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Answer: A: calculate kinship in SPAGeD
... no one can help me out???? ...
written 2.7 years ago by LJ180
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Answer: A: calculate kinship in SPAGeD
... nobody has an answer??? ...
written 2.7 years ago by LJ180
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calculate kinship in SPAGeD
... Hi all, i have a set of SNP data for some samples **(diploid species)**, and I want to calculate the kinship using SPAGeD software.So i how do i set the SNP data form to calculate kinship? And the following data is a example data. So the first line includes(# number of individuals; #number of catego ...
gwas spaged snp kinship written 2.7 years ago by LJ180
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Comment: C: how to choose optimal K in Consensus clustering
... So,we do not need to pay special attention to the cluster numbers,as long as the results meet my requirement,and the clusters are meaningful? Thanks a million. ...
written 3.1 years ago by LJ180
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Comment: C: how to choose optimal K in Consensus clustering
... Thanks for your reply. But according to the "ConsensusClusterPlus" Reference Manual, > the best way to infer best k,we can (1) not relying solely on the > consensus matrix heatmap to declare the existence of clusters;(2)apply > the proportion of ambiguous clustering (PAC),just the CDF plot ...
written 3.1 years ago by LJ180
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Comment: C: how to choose optimal K in Consensus clustering
... sorry, i made a mistake in uploading images, you should now have access to the images. ...
written 3.1 years ago by LJ180
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how to choose optimal K in Consensus clustering
... Hi all, I am trying choose best k from the consensus clustering using the "ConsensusClusterPlus" R package.And the result images are : [k=2,heatmaps of the consensus matrices][1] [k=3,heatmaps of the consensus matrices][2] [k=4,heatmaps of the consensus matrices][3] [k=5,heatmaps of the consens ...
cluster R consensus clustering written 3.1 years ago by LJ180 • updated 2.8 years ago by Chih-Hsu Jack Lin60
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Answer: A: what is the meaning of covariates in ComBat
... nobody has an answer? ...
written 3.2 years ago by LJ180

Latest awards to LJ

Popular Question 2.4 years ago, created a question with more than 1,000 views. For removing batch effects using ComBat and SVA
Popular Question 2.7 years ago, created a question with more than 1,000 views. For removing batch effects using ComBat and SVA
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Gaussian mixture model in R

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