User: khaeuk

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khaeuk70
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Posts by khaeuk

<prev • 7 results • page 1 of 1 • next >
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Any packages to validate FASTA file?
... I am trying to create a function that can take in a file and check to see if it's a valid fasta file or not ( such as making sure there's no leading tabs or spaces, the first character starts with '>', no empty lines between sequences, etc. ). I have tried using SeqIO.parse( filename, "fasta" ), ...
fasta python validation written 4 months ago by khaeuk70
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Forum: How to get involved in this field.
... Hello, I am a recent graduate student with a BS CS Bioinformatics degree. I will be heading off to industry for few years (as a full time), then go into Masters. And for those few years, I would like to know if there's anything I can do to improve myself in the field of bioinformatics, or some orga ...
bioinformatics forum written 10 months ago by khaeuk70 • updated 10 months ago by h.mon24k
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Best Representation of Protein Sequences
... Hello, I am currently working on a project that utilizes neural networks on protein sequences. However, I am quite stuck on what the best way of representing protein sequences. I will be getting protein sequence data from PDB, but each sample will have a different length of sequence. Ideally, I wou ...
R neuralnetworks machinelearning protein python written 14 months ago by khaeuk70 • updated 14 months ago by Asaf5.5k
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Trouble installing bioservices.
... Hello! I am posting another 'beginner' question.. I am trying to install bioservices because it is one of the dependencies I need for my project script. I tried ... pip install bioservices It says "Requirement already satisfied: ptyprocess>=0.5 in ... ". Then, when I run my install modules ...
bioservices pip install terminal written 21 months ago by khaeuk70 • updated 20 months ago by Biostar ♦♦ 20
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How to reorder dendrogram (R)?
... Hello everyone! As my title says, I am having difficulty reordering my dendrogram. What I would like to do with my dendrogram is to flip two nodes along the y axis. For example, ![enter image description here][1] How would I do this? I looked at reorder.dendrogram. But I don't quite get what it me ...
R dendrogram hclust reorder heatmap.2 written 2.8 years ago by khaeuk70 • updated 2.0 years ago by Arnaud Ceol840
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Comment: C: Do I have to check every fastqc to make good quality?
... Thank you so muchhhh!!! ...
written 2.9 years ago by khaeuk70
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Do I have to check every fastqc to make good quality?
... Hello everyone, I'm pretty new to the field, so forgive me if this is a dumb question. So, I am working on mapping out single reads to the reference mouse genome, with given 260 fastq files. What I'd like to do is make all 260 files to be good quality reads. Right now it's a total mess, as in some ...
gene fastq sequencing rna-seq fastqc written 2.9 years ago by khaeuk70 • updated 2.9 years ago by ivivek_ngs4.8k

Latest awards to khaeuk

Popular Question 12 months ago, created a question with more than 1,000 views. For How to reorder dendrogram (R)?
Popular Question 20 months ago, created a question with more than 1,000 views. For How to reorder dendrogram (R)?
Student 21 months ago, asked a question with at least 3 up-votes. For Do I have to check every fastqc to make good quality?

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