User: sdf.ambreen

gravatar for sdf.ambreen
sdf.ambreen10
Reputation:
10
Status:
New User
Location:
Last seen:
1 year, 3 months ago
Joined:
3 years, 2 months ago
Email:
s**********@gmail.com

Posts by sdf.ambreen

<prev • 16 results • page 1 of 2 • next >
0
votes
0
answers
288
views
0
answers
Oncotator for non-Human species
... Hi Everyone! Can i use Oncotator for dog cancer annotation,if yes than how i can use ? ...
software error written 15 months ago by sdf.ambreen10 • updated 15 months ago by genomax70k
1
vote
0
answers
781
views
0
answers
Whole Exomes Sequence Pipeline
... Hi everyone! I have downloaded some Whole Exome sequencing (WES) samples of DOG mammary cancer. I know that I have to use -L (targets) provided by the company, but these WES is from online available data http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=SRX288294. Can I also download it online? ...
sequence written 2.2 years ago by sdf.ambreen10
1
vote
1
answer
1.3k
views
1
answer
Repeat Masker can be used for bacteria?
... Hi..Can we use repeatmasker to find and mask the repeats in bacteria? If not, then what is the alternative ?? ...
genome written 2.8 years ago by sdf.ambreen10 • updated 2.8 years ago by natasha.sernova3.5k
0
votes
1
answer
683
views
1
answer
How to retrieve RNA sequences
... I have cuff-merge results, its provide me coordinates of genome. I retrieve the genomics sequences of these transcripts. I have a confusion. This is Gene (DNA)sequences of this transcripts, how i can get the RNA sequences data.? ...
rna-seq written 3.0 years ago by sdf.ambreen10 • updated 3.0 years ago by Devon Ryan91k
0
votes
2
answers
714
views
2
answers
Answer: A: lncRNA annotation in common Carp
... Thank you everyone. Yes there is spelling mistake, sorry for that. Anyhow my question is about Common carp. I want to annotate my results. From cuff-merge i got u-class and from cuff-compare i got many classes. I have checked their coding potential, they are non-coding. Now, i want to search simila ...
written 3.0 years ago by sdf.ambreen10
6
votes
2
answers
714
views
2
answers
lncRNA annotation in common Carp
... i have find cuffcomapre results and it contain many classes. for linc RNA i have to use all classes? and how i can name lincRNA ? i am searching it in Common carp ...
rna-seq written 3.0 years ago by sdf.ambreen10
0
votes
0
answers
524
views
0
answers
(Closed) lncRNA annoatation in common crap
... i have find cuffcomapre results and many classes. for linc RNA i hav eto use all classes? and how i can name my lincRNA ? i am searching it in Common crap ...
rna-seq written 3.0 years ago by sdf.ambreen10
0
votes
0
answers
2.0k
views
0
answers
Comment: C: How to compare Trinity and Cufflinks results
... I also did the same thing but do not know the further steps.if you know ,please share ...
written 3.0 years ago by sdf.ambreen10
0
votes
0
answers
1.0k
views
0
answers
lncRNA annotation trinity
... I am studying Goldfish.it has not assembled and i use cuff links as we generated Reference genome of Goldfish. i can not find lncRNA by use cufflinks..it just have new isoforms no''u'"' class as mention in the literature that u, class is lncRNA and then i can analyze furher...but i can not find it i ...
wouterdecoster written 3.1 years ago by sdf.ambreen10
0
votes
0
answers
509
views
0
answers
mapping the sequence
... Hi..i just find some non-coding RNA. i want to map it as my reference genome is not well assembled.so, how i can map it? ...
rna-seq written 3.1 years ago by sdf.ambreen10

Latest awards to sdf.ambreen

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 696 users visited in the last hour