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Posts by Barry
... Since this 4 year old thread appears to still have a bit of life in it I'll add yet another answer. The Utah Genome Project maintains a wiki describing the steps and command lines behind it's variant calling pipeline. This is the standard 'GATK Best Practices' pipeline using HaplotypeCaller, but f ...
Answer: A: Genome Annotation
... Also, to follow up on Carson's reply if this is ABI data for a novel genome and you're hoping to annotate the genome, you'll need to assemble it some how first. There are plenty of tools out there for this sort of task, and which one you choose will depend on a number of factors. Google will lead ...
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