User: muhammadzubair777

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Posts by muhammadzubair777

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Comment: C: Error in lmfit : row dimension of design doesn't match column dimension of data
... sir how can i adjust this. i have tried alot to resolve this issue but cann't find the solution. i am using following commands >groups = pData(phenoData(gse28403dat[[1]]))$characteristics_ch1 >groups=as.character(groups) >groups[groups=="disease state: Castration-resistant prostate cancer ...
written 2.7 years ago by muhammadzubair77710
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Error in lmfit : row dimension of design doesn't match column dimension of data object
... anyone can help to resolve this issue. > fit = lmFit(gse28403eset,design_gse28403) >Error in lmFit(gse28403eset, design_gse28403) : row dimension of design doesn't match column dimension of data object > dim(gse28403eset) [1] 20425 13 > dim( ...
R bioconductor microarray data affymetrix written 2.7 years ago by muhammadzubair77710 • updated 2.7 years ago by genomax75k
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Error in lookUp(x, data, "SYMBOL") : No keys provided
... HELLO! I am sorting out genes from micro array data by using R. i have faced an error during running commands and stuck on it . please anyone help me to solve it. > groups = pData(phenoData(gse17906dat[[1]]))$source_name_ch1 > groups=as.character(groups) > groups[groups=="normal prostate ...
R bioconductor microarray data written 3.4 years ago by muhammadzubair77710
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Comment: C: Error in read.celfile.header(x) : Is GSE30521/CEL/GPL9793_gene_assignments.txt
... can you help me by modifying script? ...
written 3.5 years ago by muhammadzubair77710
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Comment: C: Error in read.celfile.header(x) : Is GSE30521/CEL/GPL9793_gene_assignments.txt
... ARE U SAYING LIKE THIS >list.files("GSE30521", pattern="*.CEL") [1] "GSM756911.CEL.gz" "GSM756912.CEL.gz" "GSM756913.CEL.gz" "GSM756914.CEL.gz" "GSM756915.CEL.gz" "GSM756916.CEL.gz" "GSM756917.CEL.gz" "GSM756918.CEL.gz" [9] "GSM756919.CEL.gz" "GSM756920.CEL.gz" "GSM756921.CEL.gz" "GSM756922.C ...
written 3.5 years ago by muhammadzubair77710
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Error in read.celfile.header(x) : Is GSE30521/CEL/GPL9793_gene_assignments.txt.gz really a CEL file
... hello Dear! i am analyzing data through R and during analyzing , file read error is coming. the using code is here. after readcell file there is an error give in box. source("http://bioconductor.org/biocLite.R") biocLite("huex10sttranscriptcluster.db") biocLite("pd.huex.1.0.st.v2") library(GEO ...
affymatrix R affymetrix analysis written 3.5 years ago by muhammadzubair77710
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ERROR in loading data through rma
... i am facing problem in loading data through rma in R. when i have run the command rmaData = rma(gse28403preset) it is giving following error! Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘rma’ for signature ‘"AffyBatch"’ code is ...
R written 3.5 years ago by muhammadzubair77710 • updated 19 months ago by zx87548.8k

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