User: deepak643

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deepak6430
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Posts by deepak643

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Comment: C: Segmentation fault (core dumped) with Samtools index sorted.bam
... Original.bam in the sense sorted.bam? ...
written 3.4 years ago by deepak6430
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Segmentation fault (core dumped) with Samtools index sorted.bam
... I am trying to create an index file for the sorted bam. But I am getting the error "Segmentation fault (core dumped)". Samtools sort command was successful. Samtools flagstat command shows up the following: 17882888 + 1 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates ...
bam samtools index written 3.4 years ago by deepak6430 • updated 3.4 years ago by Devon Ryan96k
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Comment: C: Can I get each chromosomes offset ranges in Sorted BAM/SAM file
... is there any api or samtools command to get the virtual offset from bai file? ...
written 4.1 years ago by deepak6430
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Comment: C: Can I get each chromosomes offset ranges in Sorted BAM/SAM file
... Yes the fseek to location in file. So in a sorted bam, the chromosome records will be from chr1 to chr25 sequentially. So I mean the offset ranges as chr1's records are from line number 1 to line 10. chr2 are from line 11 to line 20 and so on. So is there any way that I can get those offset ranges? ...
written 4.1 years ago by deepak6430
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Can I get each chromosomes offset ranges in Sorted BAM/SAM file
... I am looking to get the offset ranges of the each chromosome from the sorted SAM/BAM file. Is it possible? ...
bam sam written 4.1 years ago by deepak6430 • updated 4.1 years ago by venu6.6k

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