User: syrez

gravatar for syrez
syrez40
Reputation:
40
Status:
New User
Location:
Chicago
Last seen:
6 days, 9 hours ago
Joined:
3 years, 9 months ago
Email:
m*************@gmail.com

Posts by syrez

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Looking for prebuilt STAR index for hg19. STAR Genome site is down.
... Thanks, I don't need it for alignment. I simply wanted to know if there are any other shared resources where I can find the index. ...
written 6 days ago by syrez40
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Comment: C: Looking for prebuilt STAR index for hg19. STAR Genome site is down.
... Normally I would but I don't have access to an HPCC right now. I'm stranded with my laptop which has only 16gb. STAR should have worked with "--genomeSAsparseD 3 --genomeSAindexNbases 12" but the run gets killed few minutes into ".. sorting Suffix Array chunks and saving them to disk..." ...
written 6 days ago by syrez40
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Looking for prebuilt STAR index for hg19. STAR Genome site is down.
... Can someone please help me find a prebuilt STAR index? The page hosting pre-made indexes available at [STAR Genomes site][1] has been 404 for last few days. [1]: http://labshare.cshl.edu/shares/gingeraslab/www-data/dobin/STAR/STARgenomes/ ...
chip-seq star rna-seq written 6 days ago by syrez40
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Comment: C: Problem running clusterProfiler. Says DO.db is missing even when it's installed
... I've done multiple clean installs of R/RStudio/Rtools and nothing seems to be working. clusterProfiler is working absolutely fine on my other desktop - same version of OS, R, and Rstudio without any error asking for Rtools or indicating locked DLL files. I've set R/RStudio to run as administrator in ...
written 5 weeks ago by syrez40
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Problem running clusterProfiler. Says DO.db is missing even when it's installed
... I'm running Rstudio/R on Windows 10 Pro 64bit I need to generate a bunch of figures for a poster for one of our collaborating labs. A long long time ago, I used clusterProfiler within RStudio and it worked like a charm. Now, there's a chain of packages that are somehow always missing and manually ...
do.db clusterprofiler rstudio written 5 weeks ago by syrez40 • updated 4 weeks ago by Biostar ♦♦ 20
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Comment: C: Seeking private tutor to learn RNA/ChIP-Seq data analysis
... Hello Dataminer, thank you so much for offering to help. It's very kind of you. I have my own data sets and I want to use some public datasets too. You can email me at mranjan.tulane@gmail.com ...
written 2.9 years ago by syrez40
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Comment: C: Seeking private tutor to learn RNA/ChIP-Seq data analysis
... Thanks Ming, I really appreciate the information. I'm going through your notes now.. ...
written 2.9 years ago by syrez40
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Comment: C: File containing a mapping of transcripts to genes - Salmon on Galaxy
... Hi Devon! Thanks so much for the input. The example query link is down for some reason, maybe it's temporary. ...
written 2.9 years ago by syrez40
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File containing a mapping of transcripts to genes - Salmon on Galaxy
... Hello there! Could someone please help me download mapping of transcripts to genes that I can use with the Salmon tool on Galaxy? I tried UCSC Genome browser but I'm not sure if I'm doing the right thing. Thanks, Manish ...
galaxy salmon rna-seq written 2.9 years ago by syrez40 • updated 2.9 years ago by Devon Ryan94k
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Job: Seeking private tutor to learn RNA/ChIP-Seq data analysis
... Hi there! I'm looking for someone who can mentor me for analyzing RNA/ChIP-Seq data as well as show me how to access public databases. We can work online or if you're in Chicago, we can schedule meetings. I'm offering remuneration on a per session basis if you're interested. Thanks! Manish ...
chip-seq job rna-seq written 2.9 years ago by syrez40 • updated 19 months ago by shahnazhshefa0

Latest awards to syrez

Popular Question 19 months ago, created a question with more than 1,000 views. For File containing a mapping of transcripts to genes - Salmon on Galaxy
Popular Question 19 months ago, created a question with more than 1,000 views. For Seeking private tutor to learn RNA/ChIP-Seq data analysis
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Seeking private tutor to learn RNA/ChIP-Seq data analysis

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