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Comment: Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
8 days ago by O.rka ▴ 710
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333
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Comment: Comment: Help with understanding the identifier mapping tables in the backend of HUMAnN
22 days ago by O.rka ▴ 710
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344
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Comment: Comment: Why are gene models from JGI non-sense when using AGAT to to extract proteins?
4 weeks ago by O.rka ▴ 710
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665
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Comment: Comment: How to use Nextflow to call scripts from different environments?
4 months ago by O.rka ▴ 710
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559
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Comment: Comment: Why are some HUMAnN features in [name]_pathabundance.tsv missing taxonomy?
6 months ago by O.rka ▴ 710
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680
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Comment: Comment: How to convert between UniRef50 to EC/enzyme number?
7 months ago by O.rka ▴ 710
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690
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Comment: Comment: How to run TRUST4 for BCR/TCR detection using 10X data?
7 months ago by O.rka ▴ 710
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805
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Comment: Comment: When counting ASVs in DADA2, does a hit/count only occur at 100% alignment perce
8 months ago by O.rka ▴ 710
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1
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1.7k
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Comment: Comment: How can I speed up wget from UniProt for UniRef90/50 fasta?
11 months ago by O.rka ▴ 710
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1
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1.7k
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Comment: Comment: How can I speed up wget from UniProt for UniRef90/50 fasta?
11 months ago by O.rka ▴ 710
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1
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1.7k
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Comment: Comment: How can I speed up wget from UniProt for UniRef90/50 fasta?
11 months ago by O.rka ▴ 710
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24k
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Comment: Comment: Variant call format (VCF) file, how to get statistics per sample?
12 months ago by O.rka ▴ 710
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1.2k
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Comment: Comment: Should you specify "-p" for paired end reads using featureCounts?
12 months ago by O.rka ▴ 710
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1.2k
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Comment: Comment: Should you specify "-p" for paired end reads using featureCounts?
12 months ago by O.rka ▴ 710
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2.1k
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Comment: Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
13 months ago by O.rka ▴ 710
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1
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2.1k
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Comment: Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
13 months ago by O.rka ▴ 710
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1
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903
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Comment: Comment: How can I determine the number of detected genes and detected transcripts/isofor
13 months ago by O.rka ▴ 710
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1
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903
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Comment: Comment: How can I determine the number of detected genes and detected transcripts/isofor
13 months ago by O.rka ▴ 710
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1
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1.2k
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Comment: Comment: How do you download from CyVerse using FTP or wget?
13 months ago by O.rka ▴ 710
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2
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1.2k
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Comment: Comment: How do you download from CyVerse using FTP or wget?
13 months ago by O.rka ▴ 710
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735
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Comment: Comment: t2t human reference genome for RNA-seq
14 months ago by O.rka ▴ 710
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2
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1.9k
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Comment: Comment: How could I "recreate" UniRef50/UniRef90 with MMSEQS2?
14 months ago by O.rka ▴ 710
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1
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1.1k
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Comment: Comment: How can I run multiple sequence alignment for a large number of proteins (~10k)
15 months ago by O.rka ▴ 710
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1.1k
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Comment: Comment: How can I run multiple sequence alignment for a large number of proteins (~10k)
15 months ago by O.rka ▴ 710
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1.4k
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Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
16 months ago by O.rka ▴ 710
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1
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1.4k
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Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
16 months ago by O.rka ▴ 710
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642
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Comment: Comment: What's best practice when determining a degenerate base when creating a primer?
16 months ago by O.rka ▴ 710
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1
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1.4k
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Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
16 months ago by O.rka ▴ 710
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1
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1.5k
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Comment: Comment: What in silico PCR commandline tool do you use that can handle IUPAC characters?
16 months ago by O.rka ▴ 710
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1.5k
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Comment: Comment: What in silico PCR commandline tool do you use that can handle IUPAC characters?
16 months ago by O.rka ▴ 710
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70k
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Comment: Comment: Sequence length from Fasta
16 months ago by O.rka ▴ 710
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0
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776
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Comment: Comment: How to find full length ribosomal sequences for fungi?
16 months ago by O.rka ▴ 710
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0
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685
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Comment: Comment: How to "enrich" a large set of proteins (>11M) for protein hits in UniRef90?
16 months ago by O.rka ▴ 710
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1
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685
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Comment: Comment: How to "enrich" a large set of proteins (>11M) for protein hits in UniRef90?
16 months ago by O.rka ▴ 710
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0
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1.3k
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Comment: Comment: How to extract unmapped reads if you have paired end reads (fastq) and mapped BA
18 months ago by O.rka ▴ 710
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1
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1.3k
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Comment: Comment: How to extract unmapped reads if you have paired end reads (fastq) and mapped BA
18 months ago by O.rka ▴ 710
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0
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1.6k
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Comment: Comment: Are there any tools that automatically detect where to truncate forward and reve
21 months ago by O.rka ▴ 710
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0
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550
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Comment: Comment: How to calculate position-specific fastq stats?
21 months ago by O.rka ▴ 710
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1
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1.2k
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Comment: Comment: Is it required for all sequences to be same length when clustering OTUs in metag
21 months ago by O.rka ▴ 710
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0
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629
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Comment: Comment: What percent identity is recommended for detecting protein homology within a spe
21 months ago by O.rka ▴ 710
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1.6k
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Comment: Comment: Is there a tool that calculates genome coverage? (e.g., 1X, 10X, 100X)
22 months ago by O.rka ▴ 710
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1
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1.6k
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Comment: Comment: Is there a tool that calculates genome coverage? (e.g., 1X, 10X, 100X)
22 months ago by O.rka ▴ 710
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1
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1.6k
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Comment: Comment: Is there a tool that calculates genome coverage? (e.g., 1X, 10X, 100X)
22 months ago by O.rka ▴ 710
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0
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966
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Comment: Comment: How can I get a taxid from an assembly id (e.g., GCA_003223415.1 -> 2026742)
24 months ago by O.rka ▴ 710
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1
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4.1k
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Comment: Comment: What are the recommended methods for merging de-novo assemblies?
2.0 years ago by O.rka ▴ 710
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5.5k
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Comment: Comment: Create smaller bam file based on the list of sequences
2.1 years ago by O.rka ▴ 710
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7.2k
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Comment: Comment: Conversion from tdf to bed format
2.2 years ago by O.rka ▴ 710
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0
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482
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Comment: Comment: Can I download a partial database or delete subdirectories from an existing BUSC
2.2 years ago by O.rka ▴ 710
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901
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Comment: Comment: How to go from GenBank assembly identifier to taxonomic name? (Python or CLI)
2.2 years ago by O.rka ▴ 710
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0
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1.2k
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Comment: Comment: Extract the longest isoform from transcripts.fasta (rnaSPAdes output)
2.2 years ago by O.rka ▴ 710
195 results • Page 1 of 4
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