User: cleb

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cleb50
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Posts by cleb

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Scientific Programmer DSM Biotechnology Center, Delft, The Netherlands
... Looks much better now. ...
written 11 hours ago by cleb50
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Comment: C: Scientific Programmer DSM Biotechnology Center, Delft the Netherlands
... Thanks for the answer, good to know. The post, however, looks as before, seems something went wrong with the editing. ...
written 9 days ago by cleb50
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Answer: A: Scientific Programmer DSM Biotechnology Center, Delft the Netherlands
... Interesting position! What kind of web development skills are desired? Is it "only" software development or can you also program the robots themselves? Could you improve the formatting a bit, so e.g. that the bullet points are below and not right after each other and make the sub-headers bold?! The ...
written 11 days ago by cleb50
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Comment: C: How to retrieve EC numbers and KOs for proteins of several taxons?
... I added a new post [here](https://www.biostars.org/p/321307/); would be gr5eat if you could take a look, thanks! ...
written 11 months ago by cleb50
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Federated query gives: "Usupported combination of subqueries and service invocations"
... I try to perform the following query on uniprot: PREFIX rh: PREFIX up: PREFIX taxon: PREFIX rdfs: SELECT DISTINCT ?protein ?ecNumber ?reaction ?equation WHERE { ?protein a up:Protein . ?protei ...
sparql linked-data uniprot written 11 months ago by cleb50
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Comment: C: How to retrieve EC numbers and KOs for proteins of several taxons?
... Thanks for the reply. I opened a more specific question for this [here](https://www.biostars.org/p/320165/). I guess one can infer directly from the scheme how to access the stoichiometries but my attempts all failed. ...
written 11 months ago by cleb50
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How to get stoichiometric factors for a rhea reaction?
... How can I extend the below query to also retrieve the stoichiometric factors of all reagents for the given rhea reaction? I see [the scheme (slide 12)](https://www.rhea-db.org/rhea_rdf_documentation.pdf) but I am not quite sure how to access the factors. I currently have: PREFIX rh: SE ...
rhea sparql semantic-web written 11 months ago by cleb50
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Comment: C: How to retrieve EC numbers and KOs for proteins of several taxons?
... Did you have a chance to look at the second question (no pressure, just very curious :) )? If so, is this connection possible? Alternatively, one could maybe also try to get all reactions (substrates, products and stoichiometric factors) for all the EC numbers. Thanks! ...
written 11 months ago by cleb50
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Comment: C: How to retrieve EC numbers and KOs for proteins of several taxons?
... I now opened a new question [here](https://www.biostars.org/p/319463/). Thanks for helping out! ...
written 11 months ago by cleb50
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How to connect uniprot and rhea?
... This is a follow-up question of [this one](https://www.biostars.org/p/318990/). There I learned how to retrieve certain information from uniprot. I would now like to extend the sparql query shown below in such a way that I also retrieve the associated rhea reactions for each protein, ideally: 1. t ...
rhea semantic-web sparql uniprot written 11 months ago by cleb50

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Popular Question 9 months ago, created a question with more than 1,000 views. For How to check for the completeness of a pathway module in KEGG given a genbank file

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