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User: Seq225

gravatar for Seq225
Seq225 • 90
Reputation:
90
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Last seen:
5 months, 2 weeks ago
Joined:
4 years, 7 months ago
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m***********@gmail.com

Posts by Seq225

<prev • 86 results • page 1 of 9 • next >
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Comment: C: Loop in R script
... Thank you so much! It works now!!! Much appreciation for your help!! ...
written 5 months ago by Seq225 • 90
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Comment: C: Loop in R script
... Thanks for your time, and appreciate your help. I don't quite see the option of sending you the file. I am pasting it below. Thanks!! "nt" "a" "c" "g" "t" 2 1.25468332957509 0.158563316582844 -1.64006710598786 0.926245535065208 3 0.219803815359422 -0.514600017160217 -1.56107070301328 2 ...
written 5 months ago by Seq225 • 90 • updated 5 months ago by _r_am ♦ 32k
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Comment: C: Loop in R script
... I have edited my question. Is it acceptable now? ...
written 5 months ago by Seq225 • 90
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Comment: C: Loop in R script
... Thanks a lot!! I am no expert in R. Even understanding a minor issue takes time for people like me. Would you please help me fix this or direct me to somewhere where I can get some helpful insights? I have tried, but it seems to me that x needs to be defined as a function?? Error in .x[1] : ...
written 5 months ago by Seq225 • 90
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Comment: C: Loop in R script
... Ok. I have added the background Thanks. ...
written 5 months ago by Seq225 • 90
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Comment: C: Loop in R script
... Sorry, I did not provide enough background. The abc.txt files is generated using multiple custom pipelines, which incorporated bowtie, samtools, bedtools, and piPipes. The very first input file is a ~80Gb fastq file (small RNA from Illumina seq). I can use the aforementioned tools, but I am no exp ...
written 5 months ago by Seq225 • 90
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Loop in R script
... Hello, I have this R script: #!/usr/bin/env Rscript library(ggplot2) Pai <- read.csv("abc.txt", sep = "\t") colnames(Pai) <- c("nt","a","c","g","t") Pai[2:5] <- scale(Pai[2:5]) write.table(Pai, file = "PaiZscore.txt", row.names = FALSE) ...
software error R assembly genome written 5 months ago by Seq225 • 90 • updated 5 months ago by bioinformatics2020 • 570
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Comment: C: How to copy one column from many files to a new file?
... Thanks a ton! It works!! ...
written 5 months ago by Seq225 • 90
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How to copy one column from many files to a new file?
... Hello I have 200 files. Each has 2 columns. I want to copy the first column from each of the 200 files into a new file. The new file will have 200 columns. How to do this (using awk/cut/paste etc). I have tried awk, but putting it in a for loop is difficult and I have failed to do so. Thank you f ...
genome assembly sequence written 6 months ago by Seq225 • 90 • updated 6 months ago by bioinformatics2020 • 570
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Comment: C: Mapping fasta/fastq reads against a long fasta sequence using grep
... Thanks. I think then my option would be to do only perfect matches. ...
written 7 months ago by Seq225 • 90

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