User: Seq225
Seq225 • 90
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Posts by Seq225
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C: Loop in R script
... Thank you so much! It works now!!!
Much appreciation for your help!! ...
written 5 months ago by
Seq225 • 90
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C: Loop in R script
... Thanks for your time, and appreciate your help. I don't quite see the option of sending you the file. I am pasting it below.
Thanks!!
"nt" "a" "c" "g" "t"
2 1.25468332957509 0.158563316582844 -1.64006710598786 0.926245535065208
3 0.219803815359422 -0.514600017160217 -1.56107070301328 2 ...
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C: Loop in R script
... I have edited my question. Is it acceptable now? ...
written 5 months ago by
Seq225 • 90
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C: Loop in R script
... Thanks a lot!!
I am no expert in R. Even understanding a minor issue takes time for people like me.
Would you please help me fix this or direct me to somewhere where I can get some helpful insights? I have tried, but it seems to me that x needs to be defined as a function??
Error in .x[1] : ...
written 5 months ago by
Seq225 • 90
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Comment:
C: Loop in R script
... Ok. I have added the background
Thanks. ...
written 5 months ago by
Seq225 • 90
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C: Loop in R script
... Sorry, I did not provide enough background. The abc.txt files is generated using multiple custom pipelines, which incorporated bowtie, samtools, bedtools, and piPipes. The very first input file is a ~80Gb fastq file (small RNA from Illumina seq).
I can use the aforementioned tools, but I am no exp ...
written 5 months ago by
Seq225 • 90
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... Hello,
I have this R script:
#!/usr/bin/env Rscript
library(ggplot2)
Pai <- read.csv("abc.txt", sep = "\t")
colnames(Pai) <- c("nt","a","c","g","t")
Pai[2:5] <- scale(Pai[2:5])
write.table(Pai, file = "PaiZscore.txt", row.names = FALSE)
...
written 5 months ago by
Seq225 • 90
• updated
5 months ago by
bioinformatics2020 • 570
0
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... Thanks a ton! It works!! ...
written 5 months ago by
Seq225 • 90
6
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... Hello
I have 200 files. Each has 2 columns. I want to copy the first column from each of the 200 files into a new file. The new file will have 200 columns. How to do this (using awk/cut/paste etc). I have tried awk, but putting it in a for loop is difficult and I have failed to do so.
Thank you f ...
written 6 months ago by
Seq225 • 90
• updated
6 months ago by
bioinformatics2020 • 570
0
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346
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... Thanks. I think then my option would be to do only perfect matches. ...
written 7 months ago by
Seq225 • 90
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