User: kinalimeric

gravatar for kinalimeric
kinalimeric30
Reputation:
30
Status:
New User
Location:
Last seen:
5 hours ago
Joined:
4 years, 8 months ago
Email:
k**********@gmail.com

Posts by kinalimeric

<prev • 11 results • page 1 of 2 • next >
0
votes
1
answer
227
views
1
answers
Comment: C: How to work with big data from ICGC
... Thank you so much, this is really helpful and clear. ...
written 7 weeks ago by kinalimeric30
4
votes
1
answer
227
views
1
answer
How to work with big data from ICGC
... Hi all, I have downloaded 56G data from ICGC and I am having trouble analyzing it on R (Although I have access to a server). I know that ICGC data is stored in GDC. However, to analyze big data on R, I see suggestions like using SQL through dplyr/R. Do you know any way to do that? And I would lik ...
bigdata icgc sql R written 7 weeks ago by kinalimeric30 • updated 7 weeks ago by zx87549.9k
0
votes
0
answers
1.9k
views
0
answers
Comment: C: CG contents for probes in Infinium HumanMethylation450 BeadChip Kit
... I think IlluminaHumanMethylation450k.db is not available anymore. I used FDb.InfiniumMethylation.hg19 instead. ...
written 7 weeks ago by kinalimeric30
4
votes
1
answer
390
views
1
answer
Complexity of gene expression in scRNA-seq data
... Dear all, I am following this tutorial which is very understandable for single-cell analysis. However, I am confused about only one concept in here which is 'complexity': https://github.com/hbctraining/scRNA-seq/blob/master/lessons/04_SC_quality_control.md So to calculate the overall complexity o ...
single-cell seurat written 7 months ago by kinalimeric30 • updated 7 months ago by rpolicastro3.9k
0
votes
1
answer
929
views
1
answers
Answer: A: Is there a tutorial on pathway enrichment analysis in R without ready-made packa
... You can perform a hypergeometric test by yourself. ...
written 7 months ago by kinalimeric30
0
votes
1
answer
799
views
1
answers
Comment: C: SingleR for integrated scRNA-seq analysis
... But we perform integrated assay when we trying to align cell states shared across datasets. If we will use 'RNA' slot what is the point of integration? ...
written 8 months ago by kinalimeric30
0
votes
0
answers
694
views
0
answers
Comment: C: Visualize top 10 increasing peaks of the ATAC-seq data
... Thank you for your help and explanation. ...
written 11 months ago by kinalimeric30
0
votes
0
answers
694
views
0
answers
Comment: C: Visualize top 10 increasing peaks of the ATAC-seq data
... I have 8 samples. I performed differential binding analysis using diffbind. I want to show the peaks that change the most (top10) between those samples. ...
written 11 months ago by kinalimeric30
3
votes
0
answers
694
views
0
answers
Visualize top 10 increasing peaks of the ATAC-seq data
... Hi all, I want to visualize only the top ten peaks using deep tools. However, the resolution is really low if I run computeMatrix with the top 10 peaks even though I increase dpi and changing the —heatmapHeight of the heat-map. Also, I tried to run computeMatrix with all the increasing peaks then g ...
deeptools atac-seq heatmap written 11 months ago by kinalimeric30
0
votes
2
answers
1.3k
views
2
answers
Comment: C: Normalization of ATAC SEQ data for the proper deeptools heatmap
... Thank you so much for your help! ...
written 11 months ago by kinalimeric30

Latest awards to kinalimeric

Popular Question 12 weeks ago, created a question with more than 1,000 views. For Normalization of ATAC SEQ data for the proper deeptools heatmap
Voter 7 months ago, voted more than 100 times.
Supporter 11 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1150 users visited in the last hour
_