User: kinalimeric
kinalimeric • 30
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Posts by kinalimeric
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... Thank you so much, this is really helpful and clear. ...
written 7 weeks ago by
kinalimeric • 30
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... Hi all,
I have downloaded 56G data from ICGC and I am having trouble analyzing it on R (Although I have access to a server). I know that ICGC data is stored in GDC. However, to analyze big data on R, I see suggestions like using SQL through dplyr/R.
Do you know any way to do that? And I would lik ...
written 7 weeks ago by
kinalimeric • 30
• updated
7 weeks ago by
zx8754 ♦ 9.9k
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... I think IlluminaHumanMethylation450k.db is not available anymore. I used FDb.InfiniumMethylation.hg19 instead. ...
written 7 weeks ago by
kinalimeric • 30
4
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390
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... Dear all,
I am following this tutorial which is very understandable for single-cell analysis. However, I am confused about only one concept in here which is 'complexity':
https://github.com/hbctraining/scRNA-seq/blob/master/lessons/04_SC_quality_control.md
So to calculate the overall complexity o ...
written 7 months ago by
kinalimeric • 30
• updated
7 months ago by
rpolicastro ♦ 3.9k
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... You can perform a hypergeometric test by yourself. ...
written 7 months ago by
kinalimeric • 30
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... But we perform integrated assay when we trying to align cell states shared across datasets.
If we will use 'RNA' slot what is the point of integration? ...
written 8 months ago by
kinalimeric • 30
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... Thank you for your help and explanation. ...
written 11 months ago by
kinalimeric • 30
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... I have 8 samples. I performed differential binding analysis using diffbind. I want to show the peaks that change the most (top10) between those samples. ...
written 11 months ago by
kinalimeric • 30
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... Hi all,
I want to visualize only the top ten peaks using deep tools. However, the resolution is really low if I run computeMatrix with the top 10 peaks even though I increase dpi and changing the —heatmapHeight of the heat-map. Also, I tried to run computeMatrix with all the increasing peaks then g ...
written 11 months ago by
kinalimeric • 30
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... Thank you so much for your help! ...
written 11 months ago by
kinalimeric • 30
Latest awards to kinalimeric
Popular Question
12 weeks ago,
created a question with more than 1,000 views.
For Normalization of ATAC SEQ data for the proper deeptools heatmap
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7 months ago,
voted more than 100 times.
Supporter
11 months ago,
voted at least 25 times.
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