User: shynilasanthi

gravatar for shynilasanthi
Reputation:
30
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New User
Location:
Sri Lanka
Last seen:
2 months ago
Joined:
1 year, 7 months ago
Email:
s************@gmail.com

Posts by shynilasanthi

<prev • 12 results • page 1 of 2 • next >
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making a custom reference
... I have illumina short reads which I want to call SNP without using a reference genome. I want to make a consenses sequence of some selected reads and then align the other reads to it. so the basic idea is that the consensus sequence need to be act like a "dummy genome" Is there any way to do this? ...
genome assembly alignment snp written 10 weeks ago by shynilasanthi30 • updated 10 weeks ago by ori50
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Comment: C: SNP calling from a scaffold.fa file
... Yes, This is exactly what I was looking for. Thank you very much! ...
written 11 weeks ago by shynilasanthi30
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SNP calling from a scaffold.fa file
... I have assembled my illumina Rad-seq paired end short reads using Abyss. My question is, is it possible to call SNP using a reference genome for the assemblies? the output is in fasta format. Thank you in advance. ...
fasta snp calling abyss written 11 weeks ago by shynilasanthi30 • updated 11 weeks ago by pfs230
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constructing a supercontig from selected reads
... I have illumina paired end RADseq dataset of two woodpecker species and their hybrids.I'm trying to make a hybrid index for the two species. for that I need to construct a supercontig using some selected reads from parental samples contain unique SNPs. Is there anyway to do that?because in the next ...
rad-seq supercontig next-gen written 11 weeks ago by shynilasanthi30
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Comment: C: error in using stacks pipeline
... thanks a lot for the tip and seemed like my problem was a frequent issue in stacks. ...
written 5 months ago by shynilasanthi30
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error in using stacks pipeline
... I am using stacks pipeline for RADseq read assembly. I get this error in ustacks step *** Error in `ustacks': malloc(): memory corruption: 0x000055db58024be0 *** Can someone please tell me what would be the reason. thanks ...
assembly ngs stacks written 5 months ago by shynilasanthi30
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Comment: C: GBS and RADseq
... Thank you so much William. That was descriptive and helpful. ...
written 9 months ago by shynilasanthi30
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Comment: C: GBS and RADseq
... Thank you very much. I will refer them. I got some confusing answers when I was searching. That's why I thought to post my question here. ...
written 9 months ago by shynilasanthi30
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GBS and RADseq
... Can someone please tell me the difference between GBS and RADseq? and which one is better for SNP discovery? ...
gbs next-gen radseq sequencing written 9 months ago by shynilasanthi30 • updated 9 months ago by William4.1k
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Comment: C: Assembling sequence data generated by RADseq
... Thank you Rohit. I'll check that out ...
written 10 months ago by shynilasanthi30

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