User: fanglujing

gravatar for fanglujing
fanglujing20
Reputation:
20
Status:
New User
Location:
China/xiamen
Last seen:
4 hours ago
Joined:
1 year, 5 months ago
Email:
f*********@126.com

Posts by fanglujing

<prev • 16 results • page 1 of 2 • next >
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Comment: C: how to get ko definition by using KEGG API?
... thanks for give me a useful method to solve my problem ...
written 15 days ago by fanglujing20
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Comment: C: how to get ko definition by using KEGG API?
... thank you, it's very easy and convenient to use this. ...
written 15 days ago by fanglujing20
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Comment: C: how to get ko definition by using KEGG API?
... thanks, I just found a useful R package called KEGGREST. This package can help me figure out this problem. Anyway, many thanks. ...
written 21 days ago by fanglujing20
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how to get ko definition by using KEGG API?
... Hi, I have many KO IDs and I want to get these KO IDs definition by using KEGG API. But I found some examples in KEGG API official website didn't work. Is the KEGG API still available? or I use the wrong way. This is my API url (http://api.kegg.net/get/ko/K00768). Is there anyone could provide an a ...
kegg written 21 days ago by fanglujing20 • updated 20 days ago by cpad01123.6k
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Comment: C: download nr database protein accession number to GO term file
... I'll try that way, I really appreciate it. ...
written 24 days ago by fanglujing20
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Comment: C: download nr database protein accession number to GO term file
... thanks, I have tried the InterProScan, but I can't bear its annotation speed, I don't know if this software support blast tabluar or xml format result as its input. In fact, I employ the idea of blast2go, store database in mysql is more quicker than just use the python or perl annotation. But, you k ...
written 24 days ago by fanglujing20
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Comment: C: download nr database protein accession number to GO term file
... well, I just wanna download the database and import it to mysql, so I can use mysql to annotate my blastx result. In most situation, I work on non-model organism. ...
written 24 days ago by fanglujing20
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download nr database protein accession number to GO term file
... Hi, is there anyone have downloaded GO annotation file which contains nr database protein accession number and its related GO term? each line of this file may contain both nr accession number and go term. I didn't find it. If you have downloaded this file, please give me the download url, many thank ...
go annotation public database rna-seq written 24 days ago by fanglujing20
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use 16s rRNA data to predict metabolic pathway according to genome-scale network reconstructions
... I want to use 16s rRNA sequencing data to predict human gut microbiome metabolic pathways. In some researches, people use computational method the establish genome-scale metabolic reconstruction to study genotype-phenotype relationship. So, is that possible to use 16s rRNA sequencing data to predict ...
genome metabolic reconstruction written 11 weeks ago by fanglujing20
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Comment: C: problem with R interactive plot
... hi, medhat. I just figured out this problem. I used to install R by using source code, so I remove the previous version and install it by using the command line "yum install R". although I don't understand the reason, it works! anyway, thanks a lot ...
written 15 months ago by fanglujing20

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