User: fanglujing

gravatar for fanglujing
fanglujing30
Reputation:
30
Status:
New User
Location:
China/xiamen
Last seen:
2 days, 3 hours ago
Joined:
1 year, 10 months ago
Email:
f*********@126.com

Posts by fanglujing

<prev • 22 results • page 1 of 3 • next >
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Comment: C: how to use WGCNA to predict lncRNA targets?
... thanks for reply, these lncRNAs are come from RNA-seq result with expression information. ...
written 4 days ago by fanglujing30
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how to use WGCNA to predict lncRNA targets?
... Hi, I found some lncRNA sequences from my RNA-seq results, and I want to find the lncRNA targets form the rest of RNA-seq results. I have 27 samples, so I use the WGCNA to predict lncRNA targets. I have already got some modules, but I have no ideas to do for the next step. Could you plz give me some ...
wgcna lncrna written 4 days ago by fanglujing30
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which sequence file should be transcripts in full-length transcriptome analysis
... Hi, I haven't analysis Pacbio sequence data before. Now, I have some results form pacbio full-length transcriptome data. I want to get transcripts sequence from these results for next analysis. I used polished consensus high quality sequences in cluster step results. But I wander whether this is co ...
full-length transcriptome pacbio transcripts written 20 days ago by fanglujing30
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How to use E.coli genome re-sequencing data to find SNPs or genes or proteins which relate to drug resistance?
... Hi, I have E.coli genome re-sequencing data. I want to use this data to find or predict any result which related to drug resistance. I haven't had any experience about this . And now all I think is align re-sequencing data against to reference genome and get the SNPs file, So what should I do next ? ...
drug resistance e.coli re-sequencing written 8 weeks ago by fanglujing30
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Is MEGAN5 command-line could do species annotation by using accession number?
... Hi, there. I want to use MEGAN5 command-line mode to do species annotation. I blasted my nucleic acid sequence against NR database, and get tab format output file. The second column of this output file is accession number rather than GI number. MEGAN5 could parse blast output which contain gi number ...
megan5 written 4 months ago by fanglujing30
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Predict genes from megahit assembly sequence for virome tools
... Hi, there. Recently, I did some work in virome analysis. I used the GeneMark to predict genes in Metagenome analysis before. However, I wonder if this tool was also adapt in virome analysis since its function is predicting bacterial genes rather than virus genes. Is there anybody could give me som ...
virome predict genes written 4 months ago by fanglujing30 • updated 4 months ago by himanshuarya91620
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Comment: C: how to get ko definition by using KEGG API?
... thanks for give me a useful method to solve my problem ...
written 5 months ago by fanglujing30
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Comment: C: how to get ko definition by using KEGG API?
... thank you, it's very easy and convenient to use this. ...
written 5 months ago by fanglujing30
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Comment: C: how to get ko definition by using KEGG API?
... thanks, I just found a useful R package called KEGGREST. This package can help me figure out this problem. Anyway, many thanks. ...
written 6 months ago by fanglujing30
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how to get ko definition by using KEGG API?
... Hi, I have many KO IDs and I want to get these KO IDs definition by using KEGG API. But I found some examples in KEGG API official website didn't work. Is the KEGG API still available? or I use the wrong way. This is my API url (http://api.kegg.net/get/ko/K00768). Is there anyone could provide an a ...
kegg written 6 months ago by fanglujing30 • updated 6 months ago by cpad01125.2k

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