User: fanglujing

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fanglujing30
Reputation:
30
Status:
New User
Location:
China/xiamen
Last seen:
5 days, 15 hours ago
Joined:
2 years, 3 months ago
Email:
f*********@126.com

Posts by fanglujing

<prev • 28 results • page 1 of 3 • next >
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Comment: C: how to deal with sra files which can generate three fastq files?
... I have checked fastq content and I think t.kuilman's suggestion works in this situation. Thanks for the reply. ...
written 6 days ago by fanglujing30
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Comment: C: how to deal with sra files which can generate three fastq files?
... thanks for your replay and it does help me a lot. ...
written 6 days ago by fanglujing30
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how to deal with sra files which can generate three fastq files?
... Hi, I have downloaded sra file from NCBI, SRR4242282.sra and I got three fastq files after use fastq-dump to extract fastq files from sra files. command :fastq-dump --split-3 --gzip SRR4242282.sra I have no idea with this result, I haven't met this before. Any suggestion would be appreciated. ...
sra fastq fastq-dump written 7 days ago by fanglujing30 • updated 7 days ago by t.kuilman690
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Comment: C: Where I can find GPL15314 annotation file?
... Many thanks. It seems useful for me. Thanks again. ...
written 10 weeks ago by fanglujing30
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Comment: C: Where I can find GPL15314 annotation file?
... thanks for replay, I have already checked this table, but I still cannot find any name of lncRNAs. The first column and second column are same. I found a paper use same platform, and I found a list and annotation of all differentially expressed lncRNAs in their results which I need to display in my ...
written 10 weeks ago by fanglujing30
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Where I can find GPL15314 annotation file?
... Hi, as the title, where I can find GPL15314 annotation file? The platform tile is ' Arraystar Human LncRNA microarray V2.0 (Agilent_033010 Probe Name version)', so what's the meaning of Probe Name version? Does it means only probe name information in this platform with out lncRNA name? Can I use the ...
geo gpl id convert annotation written 10 weeks ago by fanglujing30 • updated 10 weeks ago by genomax57k
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Comment: C: how to use WGCNA to predict lncRNA targets?
... thanks for reply, these lncRNAs are come from RNA-seq result with expression information. ...
written 5 months ago by fanglujing30
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how to use WGCNA to predict lncRNA targets?
... Hi, I found some lncRNA sequences from my RNA-seq results, and I want to find the lncRNA targets form the rest of RNA-seq results. I have 27 samples, so I use the WGCNA to predict lncRNA targets. I have already got some modules, but I have no ideas to do for the next step. Could you plz give me some ...
wgcna lncrna written 5 months ago by fanglujing30
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which sequence file should be transcripts in full-length transcriptome analysis
... Hi, I haven't analysis Pacbio sequence data before. Now, I have some results form pacbio full-length transcriptome data. I want to get transcripts sequence from these results for next analysis. I used polished consensus high quality sequences in cluster step results. But I wander whether this is co ...
full-length transcriptome pacbio transcripts written 5 months ago by fanglujing30
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How to use E.coli genome re-sequencing data to find SNPs or genes or proteins which relate to drug resistance?
... Hi, I have E.coli genome re-sequencing data. I want to use this data to find or predict any result which related to drug resistance. I haven't had any experience about this . And now all I think is align re-sequencing data against to reference genome and get the SNPs file, So what should I do next ? ...
drug resistance e.coli re-sequencing written 7 months ago by fanglujing30

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