User: fanglujing

gravatar for fanglujing
fanglujing30
Reputation:
30
Status:
New User
Location:
China/xiamen
Last seen:
2 weeks, 6 days ago
Joined:
1 year, 7 months ago
Email:
f*********@126.com

Posts by fanglujing

<prev • 18 results • page 1 of 2 • next >
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Is MEGAN5 command-line could do species annotation by using accession number?
... Hi, there. I want to use MEGAN5 command-line mode to do species annotation. I blasted my nucleic acid sequence against NR database, and get tab format output file. The second column of this output file is accession number rather than GI number. MEGAN5 could parse blast output which contain gi number ...
megan5 written 4 weeks ago by fanglujing30
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Predict genes from megahit assembly sequence for virome tools
... Hi, there. Recently, I did some work in virome analysis. I used the GeneMark to predict genes in Metagenome analysis before. However, I wonder if this tool was also adapt in virome analysis since its function is predicting bacterial genes rather than virus genes. Is there anybody could give me som ...
virome predict genes written 5 weeks ago by fanglujing30 • updated 5 weeks ago by himanshuarya91620
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Comment: C: how to get ko definition by using KEGG API?
... thanks for give me a useful method to solve my problem ...
written 11 weeks ago by fanglujing30
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Comment: C: how to get ko definition by using KEGG API?
... thank you, it's very easy and convenient to use this. ...
written 11 weeks ago by fanglujing30
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Comment: C: how to get ko definition by using KEGG API?
... thanks, I just found a useful R package called KEGGREST. This package can help me figure out this problem. Anyway, many thanks. ...
written 12 weeks ago by fanglujing30
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how to get ko definition by using KEGG API?
... Hi, I have many KO IDs and I want to get these KO IDs definition by using KEGG API. But I found some examples in KEGG API official website didn't work. Is the KEGG API still available? or I use the wrong way. This is my API url (http://api.kegg.net/get/ko/K00768). Is there anyone could provide an a ...
kegg written 12 weeks ago by fanglujing30 • updated 12 weeks ago by cpad01124.1k
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Comment: C: download nr database protein accession number to GO term file
... I'll try that way, I really appreciate it. ...
written 3 months ago by fanglujing30
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Comment: C: download nr database protein accession number to GO term file
... thanks, I have tried the InterProScan, but I can't bear its annotation speed, I don't know if this software support blast tabluar or xml format result as its input. In fact, I employ the idea of blast2go, store database in mysql is more quicker than just use the python or perl annotation. But, you k ...
written 3 months ago by fanglujing30
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Comment: C: download nr database protein accession number to GO term file
... well, I just wanna download the database and import it to mysql, so I can use mysql to annotate my blastx result. In most situation, I work on non-model organism. ...
written 3 months ago by fanglujing30
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download nr database protein accession number to GO term file
... Hi, is there anyone have downloaded GO annotation file which contains nr database protein accession number and its related GO term? each line of this file may contain both nr accession number and go term. I didn't find it. If you have downloaded this file, please give me the download url, many thank ...
go annotation public database rna-seq written 3 months ago by fanglujing30

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