User: popayekid55

gravatar for popayekid55
popayekid5530
Reputation:
30
Status:
New User
Location:
Last seen:
6 days, 20 hours ago
Joined:
1 year, 2 months ago
Email:
p**********@gmail.com

Posts by popayekid55

<prev • 20 results • page 1 of 2 • next >
0
votes
0
answers
215
views
0
answers
Comment: C: RNASeq gender identification
... I have added the ratio. Are there any strict/range of cutoff to separate groups. Different threads gives different cutoffs [1]: http://seqanswers.com/forums/showthread.php?t=28598 ...
written 19 days ago by popayekid5530
1
vote
0
answers
215
views
0
answers
Comment: C: RNASeq gender identification
... > And the columns are unlabeled and no methodology is given, so it's not > even certain what the numbers mean. 1st column is sample IDs, subsequent columns are ChrX and ChrY. Number are raw read count aligned to chromosome. Analysis methodology as i said hisat was used to align. sequen ...
written 19 days ago by popayekid5530
0
votes
0
answers
215
views
0
answers
Comment: C: RNASeq gender identification
... these are normal samples. there are no abnormalities. could understand by `Xist expression` ...
written 19 days ago by popayekid5530
0
votes
0
answers
215
views
0
answers
Comment: C: RNASeq gender identification
... Sample_ID ChrX ChrY X/Y 1 2953921 282 10474.8971631206 2 2131045 22727 93.7671052053 3 2509846 18874 132.979018756 4 1956562 19873 98.4532783173 5 2751061 22940 119.9241935484 6 2414397 609 3964.5270935961 7 3240162 18954 170.9487179487 8 2497237 299 8351.96321070 ...
written 19 days ago by popayekid5530
5
votes
0
answers
215
views
6 follow
0
answers
RNASeq gender identification
... Dear all, i have 10 human samples. i have aligned to human grch38 from ensemble using hisat. i want to the sample gender. i have checked reads for X and Y chromosome. For all the samples X reads are greater compared to Y. i refered this [link][1]. But our samples have male samples. how is this poss ...
rna-seq written 19 days ago by popayekid5530
0
votes
0
answers
153
views
0
answers
Comment: C: Working Human siRNA database?
... working as in db links being active. Most of the database links are not available. How can i download the siRNA sequences from mitocheck? ...
written 7 weeks ago by popayekid5530
0
votes
0
answers
153
views
0
answers
Working Human siRNA database?
... are there any working human siRNA (small interfering) databases from which sequences can be downloaded? most of them are not working. few i checked from [here][1] [1]: http://www.rnaiweb.com/RNAi/RNAi_Web_Resources/siRNA_Collections___Databases/ ...
sirna database written 7 weeks ago by popayekid5530
0
votes
0
answers
181
views
0
answers
Comment: C: Plot: Abundance at telomer region
... thank you. will go through how it works ...
written 7 weeks ago by popayekid5530
1
vote
0
answers
181
views
0
answers
Plot: Abundance at telomer region
... Hi all, are there any tool or R packages to generate this [image][1]. Depth at each position can be obtained from mpileup. How to add the gene track for each chromosme. Hope gviz does that. Any suggestions [1]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492376/figure/fig4/ ...
R tool rna-seq package written 8 weeks ago by popayekid5530
0
votes
1
answer
175
views
1
answers
Comment: C: behaviour of bowtie compared to junction aligners?
... i have used bowtie2-2.2.5 version. Same version was imported to tophat as well ...
written 8 weeks ago by popayekid5530

Latest awards to popayekid55

Supporter 13 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 933 users visited in the last hour