User: badribio

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badribio200
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1 day, 13 hours ago
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1 year, 5 months ago
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Posts by badribio

<prev • 82 results • page 1 of 9 • next >
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Comment: C: How to use spliceR to run stringtie results
... could you please go through this post to see how to ask questions [link][1], i understand it may be frustrating to get an answer quickly. [1]: https://www.biostars.org/p/75548/ ...
written 8 weeks ago by badribio200
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Comment: C: what do the headers of the rMATS output files mean?
... Perfect explanation! cannot get more accurate..... it can get more confusing(but helpful) if you started explaining about other events and how they are calculated. ...
written 12 weeks ago by badribio200
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Comment: C: weird insert size post trimming
... would you like me to email it, its a pretty huge file. ...
written 3 months ago by badribio200
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Comment: C: weird insert size post trimming
... awk: line 2: function and never defined awk: line 2: function and never defined ...
written 3 months ago by badribio200
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Comment: C: weird insert size post trimming
... I don't think picard can handle single end reads for insert size for plots ...
written 3 months ago by badribio200
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Comment: C: weird insert size post trimming
... Yes will upload in sometime.. ...
written 3 months ago by badribio200
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Comment: C: weird insert size post trimming
... I just mapped paired end.._r1.fq.gz and _r2.fq.gz ...
written 3 months ago by badribio200
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Comment: C: weird insert size post trimming
... No i did not truncate any reads, just used the command i posted > new fq reads> hisat> picard insert size metrics ...
written 3 months ago by badribio200
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Comment: C: weird insert size post trimming
... I have uploaded the figure. What is leeHom capturing that other tools are not? could you please help me understand ...
written 3 months ago by badribio200
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Comment: C: weird insert size post trimming
... sure i will , would like to double check what I used , command please let me know if i need to add something else src/leeHomMulti -t 10 -f AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT -s AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -fq1sample_R1.fq -fq2 sample_R2.fq --log sample_log.txt ...
written 3 months ago by badribio200

Latest awards to badribio

Voter 12 weeks ago, voted more than 100 times.
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: junctions.bed file in hisat2
Supporter 7 months ago, voted at least 25 times.

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