User: badribio

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badribio240
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Autodidact!!!

Posts by badribio

<prev • 88 results • page 1 of 9 • next >
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Comment: C: Does input rna concentration change expressions analysis?
... That makes sense, we ran in to a different problem when we plot the TPM's for each transcript between two different concentration (same biological replicate) there are some genes that have higher TPM in the sample with more input RNA. ...
written 7 months ago by badribio240
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Does input rna concentration change expressions analysis?
... Is there a relation between the quantity of rna/cdna that is used for library prep to number of reads that you seqeunce/quantify? for example: sample a and b are biological replicates 10ng cdna was used for sample a and 20ng for sample b will you see an increase in number of reads mapping to a given ...
rna-seq written 7 months ago by badribio240 • updated 7 months ago by swbarnes27.0k
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Comment: C: Computational Scientist - Finucane Lab (4943)
... I found it here you go [link][1] [1]: https://broadinstitute.wd1.myworkdayjobs.com/en-US/broad_institute/job/Cambridge-MA/Computational-Scientist---Finucane-Lab_4943-1 ...
written 22 months ago by badribio240
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Comment: C: Error While running Hisat2: extract_splice_sites.py
... What version of python are you using? ...
written 23 months ago by badribio240
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Comment: C: How to extract specific genes from a fasta file
... reason I love python nailed it! ...
written 23 months ago by badribio240
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Comment: C: Qiime file for Krona pie chart?
... What have you done so far, and which step are you stuck? ...
written 23 months ago by badribio240
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Comment: C: How to use spliceR to run stringtie results
... could you please go through this post to see how to ask questions [link][1], i understand it may be frustrating to get an answer quickly. [1]: https://www.biostars.org/p/75548/ ...
written 2.2 years ago by badribio240
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Comment: C: what do the headers of the rMATS output files mean?
... Perfect explanation! cannot get more accurate..... it can get more confusing(but helpful) if you started explaining about other events and how they are calculated. ...
written 2.2 years ago by badribio240
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Comment: C: weird insert size post trimming
... would you like me to email it, its a pretty huge file. ...
written 2.3 years ago by badribio240
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Comment: C: weird insert size post trimming
... awk: line 2: function and never defined awk: line 2: function and never defined ...
written 2.3 years ago by badribio240

Latest awards to badribio

Popular Question 14 months ago, created a question with more than 1,000 views. For junctions.bed file in hisat2
Popular Question 16 months ago, created a question with more than 1,000 views. For blastn for paired end reads
Popular Question 19 months ago, created a question with more than 1,000 views. For blastn for paired end reads
Popular Question 21 months ago, created a question with more than 1,000 views. For blastn for paired end reads
Popular Question 22 months ago, created a question with more than 1,000 views. For blastn for paired end reads
Voter 2.2 years ago, voted more than 100 times.
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: junctions.bed file in hisat2
Supporter 2.6 years ago, voted at least 25 times.

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