User: badribio

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badribio180
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180
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Posts by badribio

<prev • 77 results • page 1 of 8 • next >
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Comment: C: weird insert size post trimming
... Yes will upload in sometime.. ...
written 1 hour ago by badribio180
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Comment: C: weird insert size post trimming
... I just mapped paired end.._r1.fq.gz and _r2.fq.gz ...
written 2 hours ago by badribio180
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Comment: C: weird insert size post trimming
... No i did not truncate any reads, just used the command i posted > new fq reads> hisat> picard insert size metrics ...
written 3 hours ago by badribio180
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Comment: C: weird insert size post trimming
... I have uploaded the figure. What is leeHom capturing that other tools are not? could you please help me understand ...
written 4 hours ago by badribio180
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Comment: C: weird insert size post trimming
... sure i will , would like to double check what I used , command please let me know if i need to add something else src/leeHomMulti -t 10 -f AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT -s AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -fq1sample_R1.fq -fq2 sample_R2.fq --log sample_log.txt ...
written 20 hours ago by badribio180
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Comment: C: weird insert size post trimming
... wow...I have no idea why when I pulled git repository this did not work! now it works... ...
written 21 hours ago by badribio180
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Comment: C: weird insert size post trimming
... looks like its not an easy tool to install, not able to install it on cluster or on my local account `make: *** [leeHom.o] Error 1` ...
written 22 hours ago by badribio180
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Comment: C: weird insert size post trimming
... Well installing it on our cluster would be pain... any other way out? ...
written 22 hours ago by badribio180
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Comment: C: weird insert size post trimming
... I am not sure what leeHOM means? is that a tool? ...
written 23 hours ago by badribio180
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Comment: C: weird insert size post trimming
... Sorry I wish I could.. ...
written 1 day ago by badribio180

Latest awards to badribio

Teacher 3 months ago, created an answer with at least 3 up-votes. For A: junctions.bed file in hisat2
Supporter 3 months ago, voted at least 25 times.

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