User: badribio

gravatar for badribio
badribio200
Reputation:
200
Status:
Trusted
Location:
Last seen:
7 hours ago
Joined:
1 year, 3 months ago
Email:
s**********@gmail.com

Autodidact!!!

Posts by badribio

<prev • 82 results • page 1 of 9 • next >
0
votes
1
answer
246
views
1
answers
Comment: C: How to use spliceR to run stringtie results
... could you please go through this post to see how to ask questions [link][1], i understand it may be frustrating to get an answer quickly. [1]: https://www.biostars.org/p/75548/ ...
written 2 days ago by badribio200
0
votes
3
answers
287
views
3
answers
Comment: C: what do the headers of the rMATS output files mean?
... Perfect explanation! cannot get more accurate..... it can get more confusing(but helpful) if you started explaining about other events and how they are calculated. ...
written 27 days ago by badribio200
0
votes
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... would you like me to email it, its a pretty huge file. ...
written 8 weeks ago by badribio200
0
votes
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... awk: line 2: function and never defined awk: line 2: function and never defined ...
written 8 weeks ago by badribio200
0
votes
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... I don't think picard can handle single end reads for insert size for plots ...
written 8 weeks ago by badribio200
1
vote
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... Yes will upload in sometime.. ...
written 8 weeks ago by badribio200
0
votes
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... I just mapped paired end.._r1.fq.gz and _r2.fq.gz ...
written 8 weeks ago by badribio200
0
votes
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... No i did not truncate any reads, just used the command i posted > new fq reads> hisat> picard insert size metrics ...
written 8 weeks ago by badribio200
0
votes
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... I have uploaded the figure. What is leeHom capturing that other tools are not? could you please help me understand ...
written 8 weeks ago by badribio200
0
votes
4
answers
624
views
4
answers
Comment: C: weird insert size post trimming
... sure i will , would like to double check what I used , command please let me know if i need to add something else src/leeHomMulti -t 10 -f AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT -s AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -fq1sample_R1.fq -fq2 sample_R2.fq --log sample_log.txt ...
written 8 weeks ago by badribio200

Latest awards to badribio

Voter 27 days ago, voted more than 100 times.
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: junctions.bed file in hisat2
Supporter 5 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 768 users visited in the last hour