User: noorpratap.singh

Reputation:
300
Status:
Trusted
Location:
University of Maryland
Website:
https://github.com/NPSDC
Last seen:
2 days, 10 hours ago
Joined:
4 years, 4 months ago
Email:
n*********@gmail.com

I am in my first year of PhD in Computer Science at University of Maryland.

Posts by noorpratap.singh

<prev • 60 results • page 1 of 6 • next >
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Comment: C: How to handle multivariable experiment with potential confounding and no biologi
... A possible way would be to do an exploratory data analysis. Do a PCA by using certain top N genes and plot the samples labelled by cell line. If you see cell lines appearing together then there is a batch effect definitely. However, the reverse might not be true. ...
written 12 weeks ago by noorpratap.singh300
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Comment: C: GSK Data Strategy & Design Expert
... Thanks a lot for the reply. ...
written 9 months ago by noorpratap.singh300
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Comment: C: GSK Data Strategy & Design Expert
... Are there any internship opportunities available? ...
written 9 months ago by noorpratap.singh300
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Comment: C: Error: unexpected '}' in " }" in R codes of Seurat
... do the following: g_marker <- list() for (i in 0:12) { g_marker[[i]] <- FindConservedMarkers(immune.combined, ident.1 = i, grouping.var = "stim", verbose = FALSE) } ...
written 9 months ago by noorpratap.singh300
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Answer: A: Error: unexpected '}' in " }" in R codes of Seurat
... The error is happening is because of **g[i].marker**. Are you sure there exists a variable/list as **g**. Assuming it exists, g[i] would point to an appropriate element (only for a vector, if g is a list then g[[i]] has to be used). The "." following creates the error. Unlike other languages, R is ...
written 9 months ago by noorpratap.singh300
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Comment: C: Bioinformatician - Genome Biologics - Accelerating Drug Development
... Are there any remote internship opportunities that are available? ...
written 19 months ago by noorpratap.singh300
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Comment: C: processing data from local fold using TCGAbiolinks
... The folder you mention, does it contain all the files listed by query. To see the total files by query use the following: `nrow(query$results[[1]])` Compare with the total downloaded files in your folder. Further could you send me the exact query you used as it would be then easier to troubleshoo ...
written 19 months ago by noorpratap.singh300
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Comment: C: processing data from local fold using TCGAbiolinks
... In the following command replace "GDCdata" with the local folder name. `GDCprepare_clinic(query, directory = "GDCdata")` ...
written 19 months ago by noorpratap.singh300
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Comment: A: Join Healx as a Scientific Programmer to find new treatments for rare disease pa
... Is the option to work remotely available? ...
written 19 months ago by noorpratap.singh300
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Comment: C: For GEO data, how to calculate the average methylation level of the gene promote
... I am not familiar with GEO but data should contain probe level information. The genomic locations of the probes can be extracted from Illumina450K annotation given the data has been retrieved by that.[Illumina Manifest][1]. Once you have that then the [paper][2] outlines a method for associating bet ...
written 21 months ago by noorpratap.singh300

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