User: ferroao

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ferroao0
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Posts by ferroao

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Comment: C: merging a number of overlapping sanger sequences
... I think my answers is appropriate to this question. You can use the moderate option if you want so. Most limitations you talked about are just about the example.txt not the script. Best, ...
written 20 days ago by ferroao0
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Answer: A: merging a number of overlapping sanger sequences
... If you have a fasta with all sequences, you can use this python script python3.4 combineSequences.py -f myfile.fasta -r myout.fas Script in: https://gitlab.com/ferroao/msa Copied from Rosa Tung https://github.com/rostun/DNA_multiple_sequence_alignment Checked in > 2000 groups of related sequenc ...
written 20 days ago by ferroao0
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Answer: A: How To Remove The Same Sequences In The Fasta Files?
... in R: library(seqinr) #when you dont use attributes to name sequences fasnoa<-seqinr::read.fasta("fasta.fasta", set.attributes = F) #get names seqnames<-names(fasnoa) #detect dups dups<-grep(TRUE,duplicated(fasnoa)) #eliminate duplicates namesnodup ...
written 24 days ago by ferroao0

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