User: julia92796

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julia927960
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Posts by julia92796

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Error in SAMTools mpileup
... I have a BAM file containing an alignment of the neanderthal y chromosome to the human y chromosome. I'm trying to extract the consensus sequence of the neanderthal reads so that I can isolate genes. I found this command online: samtools mpileup -uf ref.fa aln.bam | bcftools view -cg - | vcfutils. ...
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Comment: C: How to pull out protein sequences from from BAM files containing genomic alignme
... Thanks, this thread is helpful. I have a list of human proteins, as well as the genes coding for these proteins, and I'm trying to find homologs to the proteins in humanoid species. I suspect that the next step in my process is generating the consensus sequence for the neanderthal genome, but after ...
written 15 months ago by julia927960
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How to pull out protein sequences from from BAM files containing genomic alignments
... Hi, I'm trying to pull out protein sequences from BAM files containing genome alignments. What is the best way to do this? Right now, I have a BAM file containing the neanderthal alignment to the human genome and a fasta file containing the human reference sequence. I wasn't sure whether the next ...
genome alignment sequence samtools gene written 15 months ago by julia927960

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