User: Bioiris

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Bioiris0
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Posts by Bioiris

<prev • 16 results • page 1 of 2 • next >
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Comment: C: can'nt choose "Types Supported library" between ff-en-unstranded and fr-unstra
... sorry it was an error, I wanted to say ff-unstranded Supported library types: ff-firststrand ff-secondstrand ff-unstranded fr-firststrand fr-secondstrand fr-unstranded (default) transfrags ...
written 14 months ago by Bioiris0
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can'nt choose "Types Supported library" between ff-en-unstranded and fr-unstranded
... Hi; i have RNA-seq data (BAM files) and i know that is unstranded, but when I want to quantify with cuffdiff, I can'nt choose "Types Supported library" between ff-en-unstranded and fr-unstranded is there any method to know if my data are ff-en-unstranded or fr-unstranded ?? Thanks. ...
rna-seq written 14 months ago by Bioiris0
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Comment: C: show the names of the genes on the Y axis on the heatmap Deeptools
... yes I'm very interested if you can do it I will be very grateful ...
written 14 months ago by Bioiris0
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show the names of the genes on the Y axis on the heatmap Deeptools
... Hello, I made the heatmap of épégénétiques marks around TSS using Deeptools (ComputeMatrix then plotHeatmap) but the problem that the latest tools (plotHeatmap) gives me a heatmap with the region (+ -1kb TSS and 1KB) in X axis. is there any way to show the names of the genes on the Y axis on the ...
deeptools chip-seq rna-seq written 14 months ago by Bioiris0 • updated 14 months ago by Devon Ryan73k
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Comment: C: How to make a lot of boxplot s in the same figure
... Thank you! it's work but there is the probleme of resolution i can't differentiate between boxplots i need a method without ggplot ...
written 14 months ago by Bioiris0
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How to make a lot of boxplot s in the same figure
... ![enter image description here][1]Hello, I have a table fpkm (20 tissues) gene_id category tissue1 tissue2 tissue3 tissue4 …... tissue20 g1 unkown g2 Known g3 Known g4 unkown . . . . g3000 [url=https://postimg.org/image/4nvn96jdn/][img]htt ...
R written 14 months ago by Bioiris0 • updated 14 months ago by nadimintikrish10
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how to calculaute Tissue Specificity of genes
... salut, I have a count table , and I need to calculate the tissue specificity of genes table(A) ———————— gene_id sample1 sample2 sample3 . ……..sample20 g1 23 0 1 3 g2 35 1 4 ...
rna-seq written 14 months ago by Bioiris0 • updated 14 months ago by Charles Plessy2.3k
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Comment: C: extract a table a subset from table
... same problem counts==0 ...
written 14 months ago by Bioiris0
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Comment: C: extract a table a subset from table
... thank you It's work !! but, I lost all counts !!!!!!!!! all genes count in all tusses ==0 ...
written 14 months ago by Bioiris0
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extract a table a subset from table
... Hi; I have two tables with a large count table (A) and the second with a list of genes (B) I want to extract a table with the gene_id present in the array of genes (B) table(A) ———————— gene_id sample1 sample2 sample3 . ……..sample20 g1 23 0 ...
R written 14 months ago by Bioiris0 • updated 14 months ago by Devon Ryan73k

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