User: tianying

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tianying10
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Posts by tianying

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Comment: C: Can I estimate LD among species using SNP data?
... I just want to use LD analysis to estimate the spacing filtering parameter. I actually ran a plink LD analysis. The result showed a dramatic decay after 20bp, and became stable after 50bp. So is it reasonable to use 50 bp spacing to filter my vcf file? Or is there any other method I can estimate the ...
written 3.9 years ago by tianying10
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Can I estimate LD among species using SNP data?
... I'm working on a project using SNP data from 9 closely related plant species. For each species, I only have one individual. All species were mapped to the same reference genome. I'm planning to do some phylogenetic and admixture analyses next, and I'm not sure if I should estimate the linkage disequ ...
sequence snp written 3.9 years ago by tianying10 • updated 3.9 years ago by Bioaln340

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