User: Joe

gravatar for Joe
Joe10
Reputation:
10
Status:
New User
Location:
USA
Last seen:
1 day, 3 hours ago
Joined:
8 months ago
Email:
n*********@gmail.com

Posts by Joe

<prev • 18 results • page 1 of 2 • next >
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Answer: A: How to download BCL files from NextSeq run?
... I can answer my own question now. Use basemount. ...
written 1 day ago by Joe10
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Answer: A: Question about install Tophat and Cufflinks (Boost issue)
... I figure it out by myself, use Ubuntu 1404x instead of 1604 to avoid all these issues. I'm using 14045 right now. ...
written 5 days ago by Joe10
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How to download BCL files from NextSeq run?
... Hi I'm new to the NGS data analysis, want to practice how to use bcl2fastq to demultiplex a nextseq run. I have a run from Nextseq few weeks ago (with Basespace, didn't do standalone). Try to download BCL for this run, but I can only download fastq from basespace.illumina.com. I can see the output ...
nextseq bcl2fastq sequencing written 5 days ago by Joe10
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Comment: C: Question about install Tophat and Cufflinks (Boost issue)
... lol, I gonna try it soon. ...
written 7 months ago by Joe10
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Comment: C: Question about install Tophat and Cufflinks (Boost issue)
... I need to install boost 1.61, do I need to completely remove boost 1.58 to make 1.61 work? ...
written 7 months ago by Joe10
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Comment: C: Question about install Tophat and Cufflinks (Boost issue)
... I know I can use "apt-get" to install Tophat directly. But the goal is install Cufflinks, to follow the http://staff.um.edu.mt/jebej02/blog/2016/05/23/installing-cufflinks-rnaseq-on-ubuntu/ step by step, I'm not sure if I skip Tophat in the link will cause problem. ...
written 7 months ago by Joe10
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Question about install Tophat and Cufflinks (Boost issue)
... **I'm using Ubuntu 1604 in Oracle VM VirtualBox. Try to follow http://staff.um.edu.mt/jebej02/blog/2016/05/23/installing-cufflinks-rnaseq-on-ubuntu/ to install Cufflinks in Ubuntu. But have issue when I install Tophat:** $ tar xzvf tophat-2.1.1.tar.gz $ cd tophat-2.1.1 $ ./configure --prefix /op ...
tophat cufflinks boost written 7 months ago by Joe10
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Comment: C: How to only change/substitute every QNAME(Read ID) from a Bam file?
... It works, thanks a lot ...
written 7 months ago by Joe10
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Comment: C: How to only change/substitute every QNAME(Read ID) from a Bam file?
... The reason I want to do this is https://www.biostars.org/p/205877/ I want to change QNAME, then redo the thing I post in the link. ...
written 7 months ago by Joe10
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How to only change/substitute every QNAME(Read ID) from a Bam file?
... Hi, I need to substitute a bam file's QNAME to another bam file's QNAME, but without change header, sequence and everything else. Here is Example ( I don't show seq and others here): I have A.bam: A.bamHeader M04402:7:000000000-ANGUV:1:1106:13178:9134 147 chr1 17027 0 ............... ...
bam sam qname written 7 months ago by Joe10 • updated 7 months ago by genomax224k

Latest awards to Joe

Scholar 1 day ago, created an answer that has been accepted. For A: Question about install Tophat and Cufflinks (Boost issue)
Scholar 5 days ago, created an answer that has been accepted. For A: Question about install Tophat and Cufflinks (Boost issue)

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