User: pathreskoo

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pathreskoo10
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Posts by pathreskoo

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Comparative Marker Selection result from GenePattern: How to interprete?
... Using the same dataset, GSE49997, the comparative marker selection result from GenePattern is different from the result of pubmed GEO2R. Anyone have this experience? Besides, when I use filter to select those with fold change >= 1, the RANK is not at the top. In this case, which one should I sel ...
gene genepattern written 4.4 years ago by pathreskoo10
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about the class labels of cls file
... Suppose I have to create a cls file, do the number of the class labels have to formed in groups, such as 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 or it can be 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 Because if it have to formed into the grouped, then I have to modif ...
cls genepattern written 4.5 years ago by pathreskoo10 • updated 4.5 years ago by Mike1.7k
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How to feed GenePattern with ArrayExpress Processed data?
... I having problem in convert data into .gct format to feed into GenePattern for analysis. I find a **processed data** in ArrayExpress, I upload it to GenomeSpace, then I try to convert it to GCT using GenePattern. However, when I use **ExpressionFileCreator** module, it failed and shows Err, and tol ...
arrayexpress genepattern written 4.5 years ago by pathreskoo10 • updated 12 months ago by iael.weissberg0

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