User: pathreskoo
pathreskoo • 10
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Posts by pathreskoo
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... Using the same dataset, GSE49997, the comparative marker selection result from GenePattern is different from the result of pubmed GEO2R. Anyone have this experience?
Besides, when I use filter to select those with fold change >= 1, the RANK is not at the top. In this case, which one should I sel ...
written 4.4 years ago by
pathreskoo • 10
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... Suppose I have to create a cls file, do the number of the class labels have to formed in groups, such as
0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1
or it can be
0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1
Because if it have to formed into the grouped, then I have to modif ...
written 4.5 years ago by
pathreskoo • 10
• updated
4.5 years ago by
Mike • 1.7k
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... I having problem in convert data into .gct format to feed into GenePattern for analysis.
I find a **processed data** in ArrayExpress, I upload it to GenomeSpace, then I try to convert it to GCT using GenePattern. However, when I use **ExpressionFileCreator** module, it failed and shows Err, and tol ...
written 4.5 years ago by
pathreskoo • 10
• updated
12 months ago by
iael.weissberg • 0
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