User: Francois

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Francois0
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Posts by Francois

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Comment: A: Error when using NcbiblastnCommandline
... I use a linux-fedora. ...
written 3.2 years ago by Francois0
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Comment: A: Error when using NcbiblastnCommandline
... Thanks genomax2. I downloaded the ncbi-blast-2.4.0+-x64-linux.tar.gz version but couldn't find "blastn" inside it ! So what other version could you recommend me ? ...
written 3.2 years ago by Francois0
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Comment: C: Error when using NcbiblastnCommandline
... Thanks genomax2 and Daniel for your answers. I didn't find blast in the $PATH. When I write in my terminal : blastn -out blast.xml -outfmt 5 -query sequence_a_blaster.fasta -db nr -evalue 0.001 I get the following error message : "BLASTN 2.0MP-WashU [04-May-2006] [linux26-x64-I32LPF64 2006-05-10 ...
written 3.2 years ago by Francois0
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Error when using NcbiblastnCommandline
... Hi! I would like to use the "NcbiblastnCommandline". I tried the following script that I found in the "Biopython Tutorial" : >>> from Bio.Blast.Applications import NcbiblastnCommandline >>> blastn_cline = NcbiblastnCommandline(query="myfastaseq.fasta", db="nt", evalue=0.00 ...
biopython blast written 3.2 years ago by Francois0

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