User: Iñigo Prada

gravatar for Iñigo Prada
Iñigo Prada350
Reputation:
350
Status:
Trusted
Location:
Denmark/University of Copenagen
Last seen:
12 hours ago
Joined:
1 year, 1 month ago
Email:
p*******@hotmail.es

I am a second year Bioinformatics student and a student assistant/ Bioinformatician at the University of Copenhagen

Posts by Iñigo Prada

<prev • 79 results • page 1 of 8 • next >
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Comment: C: To screen for a good aligner
... Which kind of sequencing data are you working? I am wondering why you want to do this ...
written 6 weeks ago by Iñigo Prada350
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Differential expression: replicates in one condition, no replicates in the other
... Hi Biostars: I am facing a problem with differential expression analysis, were due to the intrinsic features of the samples we can't have replicates in one condition. **Study design:** We have a patient with a very rare translocation , no other similar translocation has been described in the worl ...
rna-seq edger sequencing written 7 weeks ago by Iñigo Prada350
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Comment: C: demultiplex a dataset when you have barcodes as a separate fastq
... If that is the answer, I assume that they have done something wrong, this is not a standard format for providing the data, right? Whatever your answer is, thanks for repplying ...
written 8 weeks ago by Iñigo Prada350
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Comment: C: The difference between sam files
... You can achieve speed by sorting the bam files by query name, then, you can loop trough both files ...
written 8 weeks ago by Iñigo Prada350
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demultiplex a dataset when you have barcodes as a separate fastq
... Hi Biostars: I have receive raw sequencing data from a collaborator, and the data is not demultiplexed. What I usually see on the fastq files that I have to analyse and demultiplex is the following: **Barcode + sequence** And then. one can use a software like [barcode_splitter][1] or demulti ...
next-gen demultiplex sequencing written 8 weeks ago by Iñigo Prada350 • updated 8 weeks ago by lelle740
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Comment: C: The difference between sam files
... do you know how to code in python? P.D: Edit the original answer, this will allow others to search the question ...
written 8 weeks ago by Iñigo Prada350
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Comment: C: segemehl - problem with segemehl.x
... have you added to the path via .bashrc? ...
written 8 weeks ago by Iñigo Prada350
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Comment: C: The difference between sam files
... You should try to explaing better what you wan't to do. [CompareSAMs][1] and [CompareMetrics][2] might be helpful. If you want more help, edit the question and explain better what you wanna do. [1]: https://broadinstitute.github.io/picard/command-line-overview.html#CompareSAMs [2]: https://bro ...
written 8 weeks ago by Iñigo Prada350
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Gene expression sperm database
... Hi Biostars! I have a set of structural variants identified in sperm, and I wanna see if there is a relationships between the mutation rate of those variants and gene expression to see if transcription correlates with mutation rate. To to so, I have gone to and [EBI expression atlas][1] and [GTEx][ ...
gtex rna-seq written 11 weeks ago by Iñigo Prada350
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Comment: C: Where can I download whole genome sequencing data and variant calling result of
... https://www.ncbi.nlm.nih.gov/sra ...
written 11 weeks ago by Iñigo Prada350

Latest awards to Iñigo Prada

Popular Question 8 weeks ago, created a question with more than 1,000 views. For Programs of UCSC utilites
Scholar 11 weeks ago, created an answer that has been accepted. For A: Tophat vs Tophat-fusion concordant alignment rate
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Pysam changes bam format when printing
Scholar 3 months ago, created an answer that has been accepted. For A: Tophat vs Tophat-fusion concordant alignment rate
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Pysam changes bam format when printing
Supporter 8 months ago, voted at least 25 times.
Scholar 9 months ago, created an answer that has been accepted. For A: Tophat vs Tophat-fusion concordant alignment rate
Autobiographer 9 months ago, has more than 80 characters in the information field of the user's profile.

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