User: IP

gravatar for IP
IP350
Reputation:
350
Status:
Trusted
Location:
Denmark/University of Copenagen
Last seen:
1 week, 3 days ago
Joined:
1 year, 3 months ago
Email:
p*******@hotmail.es

Posts by IP

<prev • 79 results • page 1 of 8 • next >
0
votes
1
answer
321
views
1
answers
Comment: C: To screen for a good aligner
... Which kind of sequencing data are you working? I am wondering why you want to do this ...
written 3 months ago by IP350
1
vote
0
answers
254
views
0
answers
Differential expression: replicates in one condition, no replicates in the other
... Hi Biostars: I am facing a problem with differential expression analysis, were due to the intrinsic features of the samples we can't have replicates in one condition. **Study design:** We have a patient with a very rare translocation , no other similar translocation has been described in the worl ...
rna-seq edger sequencing written 3 months ago by IP350
0
votes
2
answers
329
views
2
answers
Comment: C: demultiplex a dataset when you have barcodes as a separate fastq
... If that is the answer, I assume that they have done something wrong, this is not a standard format for providing the data, right? Whatever your answer is, thanks for repplying ...
written 3 months ago by IP350
0
votes
0
answers
337
views
0
answers
Comment: C: The difference between sam files
... You can achieve speed by sorting the bam files by query name, then, you can loop trough both files ...
written 3 months ago by IP350
6
votes
2
answers
329
views
5 follow
2
answers
demultiplex a dataset when you have barcodes as a separate fastq
... Hi Biostars: I have receive raw sequencing data from a collaborator, and the data is not demultiplexed. What I usually see on the fastq files that I have to analyse and demultiplex is the following: **Barcode + sequence** And then. one can use a software like [barcode_splitter][1] or demulti ...
next-gen demultiplex sequencing written 3 months ago by IP350 • updated 3 months ago by lelle740
0
votes
0
answers
337
views
0
answers
Comment: C: The difference between sam files
... do you know how to code in python? P.D: Edit the original answer, this will allow others to search the question ...
written 3 months ago by IP350
0
votes
0
answers
208
views
0
answers
Comment: C: segemehl - problem with segemehl.x
... have you added to the path via .bashrc? ...
written 3 months ago by IP350
1
vote
0
answers
337
views
0
answers
Comment: C: The difference between sam files
... You should try to explaing better what you wan't to do. [CompareSAMs][1] and [CompareMetrics][2] might be helpful. If you want more help, edit the question and explain better what you wanna do. [1]: https://broadinstitute.github.io/picard/command-line-overview.html#CompareSAMs [2]: https://bro ...
written 3 months ago by IP350
0
votes
0
answers
199
views
0
answers
Gene expression sperm database
... Hi Biostars! I have a set of structural variants identified in sperm, and I wanna see if there is a relationships between the mutation rate of those variants and gene expression to see if transcription correlates with mutation rate. To to so, I have gone to and [EBI expression atlas][1] and [GTEx][ ...
gtex rna-seq written 4 months ago by IP350
0
votes
0
answers
260
views
0
answers
Comment: C: Where can I download whole genome sequencing data and variant calling result of
... https://www.ncbi.nlm.nih.gov/sra ...
written 4 months ago by IP350

Latest awards to IP

Popular Question 3 months ago, created a question with more than 1,000 views. For Programs of UCSC utilites
Scholar 4 months ago, created an answer that has been accepted. For A: Tophat vs Tophat-fusion concordant alignment rate
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Pysam changes bam format when printing
Scholar 5 months ago, created an answer that has been accepted. For A: Tophat vs Tophat-fusion concordant alignment rate
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Pysam changes bam format when printing
Supporter 9 months ago, voted at least 25 times.
Scholar 11 months ago, created an answer that has been accepted. For A: Tophat vs Tophat-fusion concordant alignment rate
Autobiographer 11 months ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1348 users visited in the last hour