User: zzqr

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zzqr20
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1 year, 5 months ago
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2 years, 6 months ago
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Posts by zzqr

<prev • 4 results • page 1 of 1 • next >
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Answer: A: RNASeq lane effect
... If there are two different samples ran on two lanes, the seq data could not tell the difference from lane effect. Have technical replicates might be a good idea to account of the lane difference. The TMM normalization estimates scale factors between samples. It could not distinguish the effect bewte ...
written 17 months ago by zzqr20
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Answer: A: How to extract fasta sequences from assembled transcripts generated by Stringtie
... The stringtie_merged.gtf file have seqname, start, end strand info. So, you can use R GRanges object and getSeq function from GenomicRanges and BSgenome packages to retrive sequences. ...
written 17 months ago by zzqr20
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Comment: C: Ensembl gene position differ with NCBI gene
... Why Ensembl? Any reason? ...
written 2.4 years ago by zzqr20
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Ensembl gene position differ with NCBI gene
... I found genome position of Rat gene *Vom2r3 ENSRNOG00000046319* differs in Ensembl and NCBI DB. Two url as below: [Vom2r3 page in NCBI][1] [Vom2r3 page in Ensembl][2] The RefSeq & RGD link in Ensembl page is same as in NCBI page. Both reference genome is Rnor_6.0. However the genome location i ...
gene genome written 2.5 years ago by zzqr20 • updated 18 days ago by Biostar ♦♦ 20

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