User: wir

gravatar for wir
wir10
Reputation:
10
Status:
New User
Location:
Last seen:
1 year, 11 months ago
Joined:
2 years, 1 month ago
Email:
w**@umd.edu

Posts by wir

<prev • 3 results • page 1 of 1 • next >
2
votes
1
answer
1.0k
views
1
answers
Answer: A: LINCS L1000 dataset column names
... To answer my own question. The column ids for Level 3 and Level 4 data is basically the distil_id. The example I posted LJP001_BT20_24H_X1_B2_DUO52HI53LO:A03 can be broken into - the perturbagen group "LJP001" - the cell line "BT20" - the brew prefix "LJP001_BT20_24H" - the plate index "X1 ...
written 2.0 years ago by wir10
2
votes
1
answer
1.0k
views
1
answer
LINCS L1000 dataset column names
... I'm working with a [LINCS L1000 dataset][1] that gives the GE of a cell line before and after perturbation by a small molecule. I am using Level 4 data. After loading the .gct file into matlab, I get a matrix of 22268-by-40172 as well as a vector of column_ids and a vector of row_ids. Using the ro ...
lincs l1000 written 2.0 years ago by wir10 • updated 10 months ago by godwinwoo0
0
votes
0
answers
526
views
0
answers
Gene Knockouts in Cancer with Before and After GE
... I am looking for a data set (ideally but not necessarily cancer) where the gene expression of a cell is measured before and after the knockout of (any) metabolic genes. Does anyone have any suggestions? Drug response data with the gene expression before and after would also be appreciated. Thank ...
metabolism rna-seq datasets written 2.1 years ago by wir10

Latest awards to wir

Scholar 2.0 years ago, created an answer that has been accepted. For A: LINCS L1000 dataset column names

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1410 users visited in the last hour