User: wir

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wir10
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Posts by wir

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Answer: A: LINCS L1000 dataset column names
... To answer my own question. The column ids for Level 3 and Level 4 data is basically the distil_id. The example I posted LJP001_BT20_24H_X1_B2_DUO52HI53LO:A03 can be broken into - the perturbagen group "LJP001" - the cell line "BT20" - the brew prefix "LJP001_BT20_24H" - the plate index "X1 ...
written 14 months ago by wir10
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LINCS L1000 dataset column names
... I'm working with a [LINCS L1000 dataset][1] that gives the GE of a cell line before and after perturbation by a small molecule. I am using Level 4 data. After loading the .gct file into matlab, I get a matrix of 22268-by-40172 as well as a vector of column_ids and a vector of row_ids. Using the ro ...
lincs l1000 written 14 months ago by wir10 • updated 10 days ago by godwinwoo0
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Gene Knockouts in Cancer with Before and After GE
... I am looking for a data set (ideally but not necessarily cancer) where the gene expression of a cell is measured before and after the knockout of (any) metabolic genes. Does anyone have any suggestions? Drug response data with the gene expression before and after would also be appreciated. Thank ...
metabolism rna-seq datasets written 15 months ago by wir10

Latest awards to wir

Scholar 14 months ago, created an answer that has been accepted. For A: LINCS L1000 dataset column names

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