User: a.rex

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a.rex100
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Posts by a.rex

<prev • 56 results • page 1 of 6 • next >
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Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
... Thank you for this - ...
written 8 weeks ago by a.rex100
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Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
... I have added the code I have so far....any advice would be great, thanks. ...
written 8 weeks ago by a.rex100
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Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
... Hello Kevin - thank you for your help. That is not figure 1b. This is: https://media.nature.com/lw926/nature-assets/nature/journal/v539/n7627/images/nature20105-f1.jpg ...
written 8 weeks ago by a.rex100
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Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
... Thank you Kevin - But I still can't label my plot by gene expression :( ...
written 8 weeks ago by a.rex100
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Single - cell RNA-seq analysis - how to look at distribution of gene expression in a t-sne plot?
... I am using the Rtsne package to to perform cell-clustering of single-cell RNA-seq data. I first take my raw counts, normalise them by library size, and identify top 1000 highly variable genes. I save these genes, and perform clustering by t-sne. The resultant plot forms 10 distinct clusters. I ha ...
rna-seq written 8 weeks ago by a.rex100
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Comment: C: How do I go from UniProt ID to retrieving the gene name?
... Thank you - I am however aware of this. I just wanted to know if there was a way of inputting a very large list >1000 loci. Something terminal based? ...
written 3 months ago by a.rex100
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How do I go from UniProt ID to retrieving the gene name?
... I have a very long list of gene and their corresponding uniprot IDs from a blast against the uniprot database. I was wondering - is there a tool I can download to convert these ids to a gene name. Thank you ...
sequence written 3 months ago by a.rex100
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Comment: C: How do I access statistics for read counts after demultiplexing in bcl2fastq?
... Sorry - my bad, I had to download the entire subset of html files to view the index.html as it made links to other I files (I presume). ...
written 6 months ago by a.rex100
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Comment: C: How do I access statistics for read counts after demultiplexing in bcl2fastq?
... Thanks for this - I located the index.html but it is empty. However, the demultiplexed read fastqs have been made and are populated with reads.... ...
written 6 months ago by a.rex100
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Comment: C: Issues installing bcl2fastq?
... Thank you - I managed to download the deb. ...
written 6 months ago by a.rex100

Latest awards to a.rex

Supporter 12 months ago, voted at least 25 times.
Student 13 months ago, asked a question with at least 3 up-votes. For mapping reads to repetitive elements in genome?

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