User: a.rex

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a.rex80
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Posts by a.rex

<prev • 49 results • page 1 of 5 • next >
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Comment: C: How do I access statistics for read counts after demultiplexing in bcl2fastq?
... Sorry - my bad, I had to download the entire subset of html files to view the index.html as it made links to other I files (I presume). ...
written 9 weeks ago by a.rex80
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Comment: C: How do I access statistics for read counts after demultiplexing in bcl2fastq?
... Thanks for this - I located the index.html but it is empty. However, the demultiplexed read fastqs have been made and are populated with reads.... ...
written 9 weeks ago by a.rex80
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Comment: C: Issues installing bcl2fastq?
... Thank you - I managed to download the deb. ...
written 9 weeks ago by a.rex80
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How do I access statistics for read counts after demultiplexing in bcl2fastq?
... I have recently done some demultiplexing in bcl2fastq - however, how can I get data to tell me how many reads were sorted for each index? On basespace a graphical result is given for the total number of reads that passed a qc30. Is there a similar analysis in bcl2fastq? ...
bcl2fastq written 9 weeks ago by a.rex80 • updated 9 weeks ago by genomax34k
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Comment: C: Issues installing bcl2fastq?
... I downloaded the deb for 1.8.4. 2.17 is only available as an rpm file....I think. ...
written 9 weeks ago by a.rex80
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Comment: C: Issues installing bcl2fastq?
... Unfortunately I need the v2 version for a next-seq. When I convert to deb with alien, I get the following error which I cannot diagnose. dpkg-deb: error: parsing file 'debian/bcl2fastq2/DEBIAN/control' near line 2 package 'bcl2fastq2': error in Version string 'v2.17.1.14-2': version number does not ...
written 9 weeks ago by a.rex80
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Comment: C: Issues installing bcl2fastq?
... Thanks for this, I downloaded the deb, and used sudo dpkg -i bcl2fastq_1.8.4-2_amd64-2.deb. Where does it install to? ...
written 9 weeks ago by a.rex80
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Comment: C: Issues installing bcl2fastq?
... Hi, I tried using rpm. However, if I follow the illumina installation guide I also get an error when using the command: rpm --install bcl2fastq2-v2.18.0.12-Linux-x86_64.rpm. It says: rpm: RPM should not be used directly install RPM packages, use Alien instead! rpm: However assuming you know what yo ...
written 9 weeks ago by a.rex80
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Comment: A: Issues installing bcl2fastq?
... Hello. Yes, I did this after unzipping the boost-1.44 in the redist folder: sudo apt-get update sudo apt-get install build-essential g++ python-dev autotools-dev libicu-dev build-essential libbz2-dev libboost-all-dev ./bootstrap.sh ./bjam sudo ./bjam install. ...
written 9 weeks ago by a.rex80
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Issues installing bcl2fastq?
... I am trying to install bcl2fastq from source. However, during the make process, I am encountering an error: make[2]: *** [c++/lib/demultiplex/CMakeFiles/casava_demultiplex.dir/BclDemultiplexer.cpp.o] Error 1 make[1]: *** [c++/lib/demultiplex/CMakeFiles/casava_demultiplex.dir/all] Error 2 make: ...
bcl2fastq demultiplexing written 9 weeks ago by a.rex80 • updated 3 days ago by Biostar ♦♦ 20

Latest awards to a.rex

Supporter 7 months ago, voted at least 25 times.
Student 9 months ago, asked a question with at least 3 up-votes. For mapping reads to repetitive elements in genome?

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