User: Sebastian Kurscheid

Reputation:
300
Status:
Trusted
Location:
Australia, ACT, Canberra, ANU
Website:
http://twitter.com/Gen...
Twitter:
@genomicsio
Last seen:
3 years, 6 months ago
Joined:
8 years, 3 months ago
Email:
s******************@gmail.com

PhD in Bioinformatics/Molecular Biology.

Posts by Sebastian Kurscheid

<prev • 39 results • page 1 of 4 • next >
0
votes
1
answer
8.0k
views
1
answers
Answer: A: Can not find readline library when installing R
... I think you might need to install "readline-devel" - see also here: http://stackoverflow.com/questions/3087524/cannot-find-lreadline-error-when-compiling-lua ...
written 4.9 years ago by Sebastian Kurscheid300
0
votes
1
answer
8.0k
views
1
answers
Comment: C: Can not find readline library when installing R
... that seems a bit strange... which OS are you compiling it for? could you double check your environment variables? could you also post the complete "make" command line? ...
written 4.9 years ago by Sebastian Kurscheid300
0
votes
1
answer
4.5k
views
1
answers
Comment: C: From cuffnorm to DESeq
... I have not used the voom/limma method, but I believe that you again need raw count tables prior to transformation. Have a look in the limma user guide, I think there is a whole chapter on it. ...
written 4.9 years ago by Sebastian Kurscheid300
1
vote
1
answer
4.5k
views
1
answers
Answer: A: From cuffnorm to DESeq
... Based on the fact that "cuffnorm" generates normalized expression values on the various tracked features (gene/transcript/TSS/CDS), it does not make sense to use the cuffnorm output as input for further analysis in DESeq. The "cuffnorm" manual entry specifically states: "Cuffnorm will report both F ...
written 4.9 years ago by Sebastian Kurscheid300
0
votes
1
answer
3.7k
views
1
answers
Answer: A: Tophat Error IOError: [Errno 13] Permission denied
... "tophat" is the executable file. Altering its permission will not change the behaviour which caused this error. I would suggest inspecting the permissions of the directory "/media/pranavubuntu/Storage/Ubuntu/Bowtie2/Indexes/" where you store the "hg19" genome reference file, as it seems that the I/O ...
written 5.5 years ago by Sebastian Kurscheid300
0
votes
4
answers
10k
views
4
answers
Comment: C: Packages For Visualization Of Biological Data In R
... the plotrix portfolio is very helpful! ...
written 6.3 years ago by Sebastian Kurscheid300
0
votes
2
answers
14k
views
2
answers
Comment: C: Fastq Files From Different Flowcells
... could you please elaborate how a makefile will solve the problem? just curious... ...
written 6.6 years ago by Sebastian Kurscheid300
0
votes
2
answers
5.0k
views
2
answers
Comment: C: A Call For Clear Information On How To Use F-Seq For Faire-Seq
... I can help out regarding the open files under UNIX: First obtain the PID of the process, e.g. ps -C fseq -o pid= This will return the process id {PID} Then check in the /proc directory for the file descriptors used by this PID: ls -l /proc/{PID}/fd Which will show you a list of links to all ...
written 6.9 years ago by Sebastian Kurscheid300
0
votes
2
answers
2.8k
views
2
answers
Comment: C: A Chat With Oxford Nanopore’S Clive Brown At Agbt 2013
... it does. but I am a little bit amazed by some of the apparent naivety about... “We didn’t even know that long reads were so important to people until after that AGBT presentation.” ...
written 7.0 years ago by Sebastian Kurscheid300
0
votes
1
answer
3.9k
views
1
answers
Comment: C: Best Strategy For De Novo Assembly Of A Reference Transcriptome Without A Genome
... This does not make sense to me. The way I would approach this analysis (painting with the broadest brush here) is: 1) create a reference transcriptome based on reads obtained from all tissues 2) create an annotation of the transcriptome, including identification of putative splice sites 3) perform ...
written 7.0 years ago by Sebastian Kurscheid300

Latest awards to Sebastian Kurscheid

Popular Question 4.7 years ago, created a question with more than 1,000 views. For String Of "B" In Illumina Qseq Files From Paired-End Sequencing Run - Yet Qc Passed
Autobiographer 5.9 years ago, has more than 80 characters in the information field of the user's profile.
Supporter 5.9 years ago, voted at least 25 times.
Teacher 7.1 years ago, created an answer with at least 3 up-votes. For A: Trendline Of Chipseq Read Values In Intron Regions
Teacher 7.1 years ago, created an answer with at least 3 up-votes. For A: How To Join Text Files By A Certain Column (Accession Id)
Teacher 7.6 years ago, created an answer with at least 3 up-votes. For A: Picking Random Genomic Positions
Teacher 7.6 years ago, created an answer with at least 3 up-votes. For A: How Many Samples At Least Are Needed To Discover New Snps For Statistical Signif

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1026 users visited in the last hour