User: kuanyang.chew

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Posts by kuanyang.chew

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Analysing WGS data with CNAnorm: Extracting Copy Number from CNAnorm data
... Hi, I have run a Tumor-Normal sample through CNAnorm, and I have received the output. I used the function > exportTable(CN, file = "CNAnorm_table.tab", show = 'center') After doing that, I get a huge file with data like this: Chr Pos Ratio Ratio.n Ratio.s.n SegMean SegMean.n chr22 ...
next-gen cnanorm written 3.6 years ago by kuanyang.chew0
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Analysing WGS data with cn.MOPS: "Error in targets [[1]] subscript out of bounds
... Hi, I am currently analysing a retinoblastoma genome using cn.MOPS. So far, I have done the following in R > BAMFiles <- list.files(pattern=".bam$") bamDataRanges <- > getReadCountsFromBAM(BAMFiles,mode="paired") After the last line, I got the following error: Error in ta ...
next-gen written 3.6 years ago by kuanyang.chew0

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