User: reany

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reany0
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Posts by reany

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Comment: C: Error : run cnvkit from bam
... I have got the question. The index file was old than bam, cnvkit will index bam and rewrite the bai file but failed because of privileged access. ...
written 10 months ago by reany0
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Comment: C: Error : run cnvkit from bam
... Thanks for your reply. I will try. ...
written 10 months ago by reany0
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Comment: C: Error : run cnvkit from bam
... Try again and get the same error. Interestingly, cnvkit will work well in the pipeline starting with fastq file,even though it has the same cmd in CNV calling. ...
written 10 months ago by reany0
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Comment: C: Error : run cnvkit from bam
... sorry. Edit the post again. Maybe the error was relevant to subprocesses. I am not sure. ...
written 10 months ago by reany0
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Error : run cnvkit from bam
... I get an error when i run cnvkit from bam file, but run successfully from fastq file in virtual machine. Hoping someone will give a hand, thankx.The error and script like blow: cnvkit.py batch RNDHD701_180904_041701.bam -r my.reference.cnn -d RNDHD701P04_180904_041701_ANALYSIS/cnv -p 16 --- ...
software error cnvkit written 10 months ago by reany0 • updated 10 months ago by finswimmer11k
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Comment: C: ABSOLUTE MAF error
... Hi . I also encounter this issue. RunAbsolute works well locally,but when qsub to cluster,it returned the same error. Do you have any idea? thx. ...
written 22 months ago by reany0
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Comment: C: Question about MEMo(Mutual exclusivity modules) program
... Have you got the second graph? I'm also looking for software to do it.thx ...
written 2.3 years ago by reany0
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Comment: C: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in popu
... Thanks for your process.I have a question,could please interpret why should exclude chrM chrY chrX in the gistic analysis? ...
written 2.4 years ago by reany0
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Answer: A: How to handle this error:tophat_reports,about tophat fusion
... great.tophat v2.1.0 works well. thank you very much. ...
written 2.9 years ago by reany0
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How to handle this error:tophat_reports,about tophat fusion
... hi,all: when i do tophat fusion,i got an error like below.I browse many similar post in this forum and try to solve it ,but failed.Hope someone could give me a guidance.thx. my script: /share/software/Alignment/tophat/tophat-2.1.1.Linux_x86_64/tophat -n 3 -o standard_test -p 24 -G /share/PROJ/2015 ...
tophat fusion written 2.9 years ago by reany0

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Popular Question 19 months ago, created a question with more than 1,000 views. For How to handle this error:tophat_reports,about tophat fusion

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