User: Mitchell

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Mitchell40
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4 years, 7 months ago
Joined:
5 years, 10 months ago
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Posts by Mitchell

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Is It Ok To Use One End Of A Set Of Paired-End Reads As A Set Of Single Reads?
... Why would you want to do this? If you're assembling best to use paried-end. ...
written 5.2 years ago by Mitchell40
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Comment: C: Is It Ok To Use One End Of A Set Of Paired-End Reads As A Set Of Single Reads?
... Please be more context specific. Current answers assume you are performing mapping. ...
written 5.2 years ago by Mitchell40
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Comment: C: Selecting Random Pairs From Fastq?
... I think rand_records = sorted(random.sample(xrange(records), int(N))) Would do the job. ...
written 5.6 years ago by Mitchell40
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Comment: C: Assembly Of Illumina Paired-End Data With Wide/Bimodal Insert Distributions
... Hi Torst - these come from a variety of bacteria and in some cases we are lucky to have published references. Our latest data seems to be of similar fate which is worrying. I'll see what we get when not considering the paired library information. ...
written 5.9 years ago by Mitchell40
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Answer: A: Study Folding And/Or Molecular Dynamics Of Just A Flexible Part Of A Protein
... You probably want to look into GROMACS and preform simulation with position restraints enabled. There is an extensive GROMACS user community and examples should be easy to come by. ...
written 5.9 years ago by Mitchell40
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Assembly Of Illumina Paired-End Data With Wide/Bimodal Insert Distributions
... Has anyone seen a bimodal (two distinct peaks about ~200bp apart) or very wide insert length distribution (s.d. of ~100 bp) in their paired-end data? We believe that there is a fault at our sequencing provider, but this data is already 6 months late and have proceeded to try and de novo assemble th ...
assembly paired velvet written 5.9 years ago by Mitchell40 • updated 5.9 years ago by Botond Sipos1.5k

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