User: stachele

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stachele0
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Posts by stachele

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Amino Acid Change To Genomic Location
... This saved me a lot of time. Thanks! ...
written 10 months ago by stachele0
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Comment: C: Bedtools Coverage 1x Max Issue
... Did you make any progress on this problem? Currently googling and having trouble making any headway... ...
written 11 months ago by stachele0
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B Allele Frequency (VAF) Segmentation Analysis
... I am working with BAFsegmentation software (http://baseplugins.thep.lu.se/wiki/se.lu.onk.BAFsegmentation). I started with VCF files from exome sequencing, merged all sites and converted to a bed file. Then, I calculated b allele frequency at every site in this cumulative bed file for every sample an ...
scna bafsegmentation next-gen snp sequencing written 16 months ago by stachele0
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Picard SamFormatConverter gives JVM OutOfMemoryError
... I am getting an error upon running Picard SamFormatConverter: Exception in thread "main" java.lang.OutOfMemoryError: Requested array size exceeds VM limit Looking in GATK and Biostars threads, this issue seems to come up frequently. The .sam file I start with is 67Gb, which I think is not unreasona ...
alignment sequencing written 22 months ago by stachele0 • updated 22 months ago by patel.ravip50

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Popular Question 16 days ago, created a question with more than 1,000 views. For B Allele Frequency (VAF) Segmentation Analysis

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