User: Leite
Leite • 410
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Posts by Leite
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... Sure enough, I attached the table S1.csv to my drive.
I hope you can generate your graphics
[S1.csv][1]
[1]: http://%20https://drive.google.com/open?id=1wLGazT7yS4tNOydb5oxKgtPv0neV-zPe ...
written 19 days ago by
Leite • 410
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... Dear Alex Reynolds,
Thanks for the tip, next time I'll put it as indicated.
Best,
Leite ...
written 5 months ago by
Leite • 410
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... Dear Prakash
This is exactly what I was looking for.
Thank you so much!
Best,
Leite ...
written 5 months ago by
Leite • 410
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Initially I [asked a question][1] of how to make a dotplot from a list of pathways.
I was able to generate the graph, but now I can not make the groups side by side using the pathways of reference.
I do not know if that's how I tabulated my results, or if it's a problem with my code, could anyone ...
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... Hey all
I managed to do using the ggplot2
data <- read.csv("S1.csv", sep =";", header = TRUE, stringsAsFactors = FALSE)
library("ggplot2")
S1<- ggplot(data, aes(x="Groups", y=Pathways, size=DEGs, color=FDR)) + geom_point(alpha = 0.8) + facet_grid(Group ~ .) + theme_classic( ...
written 5 months ago by
Leite • 410
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... @b.nota thank you for your answer, but I need to represent very specific pathways and doing the manual I believe would not be possible. ...
written 5 months ago by
Leite • 410
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... I have a list of pathways that I have filtered from MSigDB and would like to represent them in graphs like this one. Showing the value of FDR and the number of SDRs found in each of the groups (survivors and not)
I've tried importing into the R and then using the clusterProfiler as well as ggplot2! ...
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... Dear @Kevin Blighe,
How to proceed with the FDR of each gene?
**Example**: if I do a mean of expression between the probes of the same gene, should I also do a mean of FDR value?
Would you have any reference to indicate me?
Best,
Leite
...
written 5 months ago by
Leite • 410
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... I have a list of pathways that I get from differentially expressed genes using MSigDB, all with FDR value <0.05.
Is there any way to find a correlation between the pathways?
Best,
Leite!
...
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... I did some analysis using three different microarray platforms: Illumina v3, U133A and Agilent 4x44K.
Each analysis was done separately and then overlapped the gene list by looking for genes in common.
I found 4 genes in common, however ....
How to choose the probe that best represents my genes (P ...
written 7 months ago by
Leite • 410
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