User: Leite
Leite • 300
- Reputation:
- 300
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- Trusted
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- Scholar ID:
- Google Scholar Page
- Last seen:
- 22 hours ago
- Joined:
- 1 year, 11 months ago
- Email:
- g*******@gmail.com
Posts by Leite
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Comment:
C: Gene expression using R
... Dear jrj.healey,
Thank you for the reply and sorry for the mistake.
I think my best option will be a new machine. ...
written 26 days ago by
Leite • 300
0
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Comment:
C: Gene expression using R
... Sorry, I made a mistake, yes it's 6GB and not 6MB ...
written 26 days ago by
Leite • 300
0
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1
answer
154
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Comment:
C: Gene expression using R
... Dear jrj.healey,
6Mb is the total memory capacity of my computer. ...
written 26 days ago by
Leite • 300
3
votes
1
answer
154
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6 follow
1
answer
... Hello everyone,
I am analyzing a large microarray database, (n = 820), And the R has reached the total memory of my computer
Warning messages:
1: In dimnames(object[[nm]]) <- dn :
Reached total allocation of 6036Mb: see help(memory.size)
2: In dimnames(object[[nm]]) <- ...
written 26 days ago by
Leite • 300
• updated
26 days ago by
Santosh Anand • 3.8k
1
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1
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91
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1
answers
... Thank you so much my friend! ...
written 6 weeks ago by
Leite • 300
4
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1
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1
answer
... Hello everyone,
I have a simple question, the file `series_matrix.txt` in GEO are always the normalized data of the study?
Best,
Leite ...
written 6 weeks ago by
Leite • 300
• updated
6 weeks ago by
Kevin Blighe ♦ 26k
1
vote
1
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461
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... Dear krushnach80,
In our study, we did not use the "TTN" sequence as seed but rather the gene itself.
And yes, just put the name of the gene of interest in BIOGRID as well as in the other databases and find the interactions. ...
written 7 weeks ago by
Leite • 300
2
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1
answer
461
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1
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... Dear krushnach,
With regard to the parameters to filter the key nodes of the network, they come according to the number of nodes and vertices of the network. If you have a large network, you put a high degree, BC and the CC, and the same if it is a small network, you can put a smaller cut-off.
Fo ...
written 8 weeks ago by
Leite • 300
1
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0
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252
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... Oi Kevin,
This point I had not thought of.
"The only other thing that you need to ensure is that your column names (in `eset`) are in the same order as your samples in `targets`."
Thank you very much for this super tip, it made all the difference now. ...
written 11 weeks ago by
Leite • 300
0
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... Boa tarde Kevin,
I can find many genes with an adjusted p <0.05. I'll try what you mentioned.
What does not make me very comfortable with this code is this function `eset <- readExpressionSet` I'm still studying more about it.
...
written 11 weeks ago by
Leite • 300
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11 weeks ago,
created 100 posts.
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8 months ago,
created an answer that has been accepted.
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11 months ago,
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created an answer with at least 3 up-votes.
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