User: Leite

gravatar for Leite
Leite200
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200
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16 hours ago
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1 year, 5 months ago
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Posts by Leite

<prev • 80 results • page 1 of 8 • next >
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Answer: A: The proper order of defining groups in GEO2R
... Hi Nazanin, I think a question similar to that has been answered before. Look that: > [https://www.biostars.org/p/192328/][1] [1]: https://www.biostars.org/p/192328/ ...
written 5 weeks ago by Leite200
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Answer: A: Looking for Training in opportunities in Bioinformatics?
... I think this great list can help you. https://github.com/ossu/bioinformatics Best regards, Leite ...
written 5 weeks ago by Leite200
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Answer: A: Protein-protein interaction database for human
... I think these articles can be very useful for you to begin to better understand how to build your networks: 1. [Interactome networks and human disease.][1] 2. [Using graph theory to analyze biological networks][2] 3. [Construction and analysis of protein–protein interaction networks][3] 4. ...
written 6 weeks ago by Leite200
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Comment: C: Normalization using the quantile function
... Hey Kevin, Thank you so much! I boxplot(log(as.matrix(**x**)),las=2,ylab="Log2(Intensity)") I checked my code and found an error, I used this function to create the boxplot, but my sample **x** was already in the log function, so it was as if I was log twice. Now I gotta fix the error. Best ...
written 6 weeks ago by Leite200
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Normalization using the quantile function
... Hello everyone, I normalized a data using the quantile function in the Bioconductor package limma, boxplots for each group before (**A**) and after (**B**) the process this does not look like what I usually see. Could anyone, please, explain to me why by that black part passed to down of the boxpl ...
R normalization quantile written 6 weeks ago by Leite200 • updated 6 weeks ago by Kevin Blighe12k
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Answer: A: compare two gene lists
... You can use [http://bioinfogp.cnb.csic.es/tools/venny/][1] [1]: http://bioinfogp.cnb.csic.es/tools/venny/ ...
written 7 weeks ago by Leite200
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Comment: C: Different gene "nomenclature" in the list of DEGS
... I believe it would not make a significant difference, it would only make the table more organized. Thank you. ...
written 8 weeks ago by Leite200
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Comment: C: Different gene "nomenclature" in the list of DEGS
... Both platforms accepted the mixed data, some genes were not found, but I believe it is not because of the mix ID. I'm thinking about manually filtering for uniprot ID or NCBI, What you think about? ...
written 9 weeks ago by Leite200
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Comment: C: Different gene "nomenclature" in the list of DEGS
... I'm using Reactome for pathways and PANTHER for GO. So, Do you think I can have problems? ...
written 9 weeks ago by Leite200
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Comment: C: Different gene "nomenclature" in the list of DEGS
... Hey genomax, thank you so much, The platfmor on GEO is [GPL4133][1], so my code have a problem? What I can I do? Best regards, Leite [1]: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL4133 ...
written 9 weeks ago by Leite200

Latest awards to Leite

Scholar 10 weeks ago, created an answer that has been accepted. For A: military application of bioinformatics
Scholar 5 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Supporter 5 months ago, voted at least 25 times.

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