User: Leite

gravatar for Leite
Leite240
Reputation:
240
Status:
Trusted
Location:
Scholar ID:
Google Scholar Page
Last seen:
1 day, 1 hour ago
Joined:
1 year, 9 months ago
Email:
g*******@gmail.com

Posts by Leite

<prev • 103 results • page 1 of 11 • next >
1
vote
0
answers
197
views
0
answers
Comment: C: What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Oi Kevin, This point I had not thought of. "The only other thing that you need to ensure is that your column names (in `eset`) are in the same order as your samples in `targets`." Thank you very much for this super tip, it made all the difference now. ...
written 16 days ago by Leite240
0
votes
0
answers
197
views
0
answers
Comment: C: What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Boa tarde Kevin, I can find many genes with an adjusted p <0.05. I'll try what you mentioned. What does not make me very comfortable with this code is this function `eset <- readExpressionSet` I'm still studying more about it. ...
written 16 days ago by Leite240
0
votes
0
answers
197
views
0
answers
Comment: C: What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Hey Kevin, Thank you so much for your reply. I decided to use the normalized data, it seemed to be the best and easiest way to analyze this data. I made a breakthrough this weekend and my R code is like this: #Configure o diretório de trabalho setwd("C:/Users/") #Read the targets ...
written 16 days ago by Leite240
0
votes
0
answers
197
views
0
answers
Comment: C: What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Thank you so much again. ...
written 18 days ago by Leite240
0
votes
0
answers
197
views
0
answers
Comment: C: What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Hey h.mon, ty so much. I'll try to do this. the difference `topTreat()` and `topTable()` is that in `topTreat` I can use more parameters to filter, or have more things? ...
written 18 days ago by Leite240
6
votes
0
answers
197
views
0
answers
What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Hello everyone, I tried to help on a [post one month ago][1], but without success. I continue to have problems analyzing the HumanHT-12 chip, I'm trying to follow this [code][2] by @Gordon Smyth. My biggest problem is to split the groups, how to tell the R what Healthy controls and the patients. ...
R microarray humanht-12 illumina written 18 days ago by Leite240
0
votes
0
answers
151
views
0
answers
Comment: C: I'm facing a problem to analyze microarray data from Illumina HumanHT-12
... Dear Kevin, I found it's answer in this post [https://support.bioconductor.org/p/92834/][1] by Gordon Smyth, but I still don't understand how he did to say what samples are"controls" and are "patients". > library(limma) > x <- read.ilmn("GSE74629_non-normalized.txt",expr="SAMPLE " ...
written 26 days ago by Leite240
1
vote
1
answer
128
views
1
answers
Answer: A: Create a network file to specie without PPI information
... Hello, Olá aboutmb I was working with goat proteins which is a not very studied animal, so I turned my list to similiar Bos taurus proteins which is the most studied ruminant (via uniprot) and so I built my network in STRING. Example: You can to do is to turn your list into a list of the most stud ...
written 26 days ago by Leite240
0
votes
0
answers
173
views
0
answers
Comment: C: How to create a gene network
... Hello The Last Word, I was working with goat proteins which is a not very studied animal, so I turned my list to similiar *Bos taurus* proteins which is the most studied ruminant (via uniprot) and so I built my network in STRING. So, you can to do is to turn your list into a list of the most studi ...
written 6 weeks ago by Leite240
0
votes
0
answers
151
views
0
answers
Comment: C: I'm facing a problem to analyze microarray data from Illumina HumanHT-12
... Dears colleagues, I found some answers: **First question: E-MTAB-5273.raw file represents non-normalized data? While processed file, represents normalized?** Yes the .raw file in E-MTAB represent non-normalized, as well as processed is the normalized file loaded in this database. So, .bgf is a man ...
written 6 weeks ago by Leite240

Latest awards to Leite

Voter 10 days ago, voted more than 100 times.
Centurion 18 days ago, created 100 posts.
Popular Question 21 days ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 10 weeks ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Popular Question 3 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Scholar 6 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Scholar 9 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Supporter 9 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 906 users visited in the last hour