User: Leite

gravatar for Leite
Leite410
Reputation:
410
Status:
Trusted
Location:
Scholar ID:
Google Scholar Page
Last seen:
5 days, 17 hours ago
Joined:
2 years, 9 months ago
Email:
g*******@gmail.com

Posts by Leite

<prev • 122 results • page 1 of 13 • next >
0
votes
0
answers
480
views
0
answers
Comment: C: Dotplot for filtered pathways result
... Sure enough, I attached the table S1.csv to my drive. I hope you can generate your graphics [S1.csv][1] [1]: http://%20https://drive.google.com/open?id=1wLGazT7yS4tNOydb5oxKgtPv0neV-zPe ...
written 19 days ago by Leite410
0
votes
1
answer
331
views
1
answers
Comment: C: Dividing the groups on the same axis using ggplot2
... Dear Alex Reynolds, Thanks for the tip, next time I'll put it as indicated. Best, Leite ...
written 5 months ago by Leite410
0
votes
1
answer
331
views
1
answers
Comment: C: Dividing the groups on the same axis using ggplot2
... Dear Prakash This is exactly what I was looking for. Thank you so much! Best, Leite ...
written 5 months ago by Leite410
6
votes
1
answer
331
views
5 follow
1
answer
Dividing the groups on the same axis using ggplot2
... Initially I [asked a question][1] of how to make a dotplot from a list of pathways. I was able to generate the graph, but now I can not make the groups side by side using the pathways of reference. I do not know if that's how I tabulated my results, or if it's a problem with my code, could anyone ...
R ggplot2 graph dotplot written 5 months ago by Leite410 • updated 5 months ago by Prakash1.2k
1
vote
0
answers
480
views
0
answers
Comment: C: Dotplot for filtered pathways result
... Hey all I managed to do using the ggplot2 data <- read.csv("S1.csv", sep =";", header = TRUE, stringsAsFactors = FALSE) library("ggplot2") S1<- ggplot(data, aes(x="Groups", y=Pathways, size=DEGs, color=FDR)) + geom_point(alpha = 0.8) + facet_grid(Group ~ .) + theme_classic( ...
written 5 months ago by Leite410
0
votes
0
answers
480
views
0
answers
Comment: C: Dotplot for filtered pathways result
... @b.nota thank you for your answer, but I need to represent very specific pathways and doing the manual I believe would not be possible. ...
written 5 months ago by Leite410
3
votes
0
answers
480
views
0
answers
Dotplot for filtered pathways result
... I have a list of pathways that I have filtered from MSigDB and would like to represent them in graphs like this one. Showing the value of FDR and the number of SDRs found in each of the groups (survivors and not) I've tried importing into the R and then using the clusterProfiler as well as ggplot2! ...
pathways ggplot2 clusterprofiler R dotplot written 5 months ago by Leite410 • updated 5 months ago by RamRS22k
0
votes
1
answer
400
views
1
answers
Comment: C: Multiple transcripts for same gene in array gene expression profile?
... Dear @Kevin Blighe, How to proceed with the FDR of each gene? **Example**: if I do a mean of expression between the probes of the same gene, should I also do a mean of FDR value? Would you have any reference to indicate me? Best, Leite ...
written 5 months ago by Leite410
1
vote
0
answers
227
views
0
answers
Differential correlation between pathways
... I have a list of pathways that I get from differentially expressed genes using MSigDB, all with FDR value <0.05. Is there any way to find a correlation between the pathways? Best, Leite! ...
pathways correlation written 7 months ago by Leite410 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
213
views
0
answers
How to choose the best probe between different microarray platforms?
... I did some analysis using three different microarray platforms: Illumina v3, U133A and Agilent 4x44K. Each analysis was done separately and then overlapped the gene list by looking for genes in common. I found 4 genes in common, however .... How to choose the probe that best represents my genes (P ...
gene R microarray platforms written 7 months ago by Leite410

Latest awards to Leite

Popular Question 16 days ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 4 months ago, created a question with more than 1,000 views. For PANTHER GENE LIST
Popular Question 7 months ago, created a question with more than 1,000 views. For Microarray analysis in limma
Popular Question 8 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 8 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 8 months ago, created a question with more than 1,000 views. For Microarray analysis in limma
Popular Question 9 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Voter 12 months ago, voted more than 100 times.
Centurion 12 months ago, created 100 posts.
Popular Question 13 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 14 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Popular Question 15 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Scholar 18 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Scholar 22 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Supporter 22 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2110 users visited in the last hour