User: Leite

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Leite310
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Posts by Leite

<prev • 114 results • page 1 of 12 • next >
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Differential correlation between pathways
... I have a list of pathways that I get from differentially expressed genes using MSigDB, all with FDR value <0.05. Is there any way to find a correlation between the pathways? Best, Leite! ...
pathways correlation written 26 days ago by Leite310 • updated 10 days ago by Biostar ♦♦ 20
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How to choose the best probe between different microarray platforms?
... I did some analysis using three different microarray platforms: Illumina v3, U133A and Agilent 4x44K. Each analysis was done separately and then overlapped the gene list by looking for genes in common. I found 4 genes in common, however .... How to choose the probe that best represents my genes (P ...
gene R microarray platforms written 5 weeks ago by Leite310
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Comment: C: Why is not UniHi generating the PPI network?
... Hey Al-mustanjid, I I had the same error. Why don't you try STRING? OR BioGRID3.5? https://string-db.org/ https://thebiogrid.org/ Best, Leite ...
written 6 weeks ago by Leite310
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Comment: C: Gene expression using R
... Dear jrj.healey, Thank you for the reply and sorry for the mistake. I think my best option will be a new machine. ...
written 4 months ago by Leite310
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Comment: C: Gene expression using R
... Sorry, I made a mistake, yes it's 6GB and not 6MB ...
written 4 months ago by Leite310
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Comment: C: Gene expression using R
... Dear jrj.healey, 6Mb is the total memory capacity of my computer. ...
written 4 months ago by Leite310
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Gene expression using R
... Hello everyone, I am analyzing a large microarray database, (n = 820), And the R has reached the total memory of my computer Warning messages: 1: In dimnames(object[[nm]]) <- dn : Reached total allocation of 6036Mb: see help(memory.size) 2: In dimnames(object[[nm]]) <- ...
R reached total allocation microarray written 4 months ago by Leite310 • updated 4 months ago by Santosh Anand4.3k
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Comment: C: series_matrix.txt in GEO are they always the normalized values?
... Thank you so much my friend! ...
written 5 months ago by Leite310
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series_matrix.txt in GEO are they always the normalized values?
... Hello everyone, I have a simple question, the file `series_matrix.txt` in GEO are always the normalized data of the study? Best, Leite ...
geo series_matrix.txt written 5 months ago by Leite310 • updated 5 months ago by Kevin Blighe33k
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Comment: C: Which method do you use to build adjacency matrix of a genes co-expression netwo
... Dear krushnach80, In our study, we did not use the "TTN" sequence as seed but rather the gene itself. And yes, just put the name of the gene of interest in BIOGRID as well as in the other databases and find the interactions. ...
written 5 months ago by Leite310

Latest awards to Leite

Popular Question 5 weeks ago, created a question with more than 1,000 views. For Microarray analysis in limma
Popular Question 10 weeks ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 10 weeks ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Microarray analysis in limma
Popular Question 12 weeks ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
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Popular Question 6 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 8 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
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