User: Leite

gravatar for Leite
Leite1.0k
Reputation:
1,010
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Location:
São Paulo - Brazil - Unifesp
Website:
http://bioinformaticab...
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Google Scholar Page
Last seen:
23 hours ago
Joined:
3 years, 10 months ago
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g*******@gmail.com

Posts by Leite

<prev • 155 results • page 1 of 16 • next >
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Comment: C: pathway or network from DEG list tool (plant)
... First, you need to find out which is the closest organism that has interaction data available. Then you have to change the access to a more general nomenclature, maybe the name gene. ...
written 6 days ago by Leite1.0k
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Comment: C: pathway or network from DEG list tool (plant)
... Dear @manekineko Often the organism we work with is not available or has little information, but we can use another as a knowledge base. Once worked with goat and since I didn't have much information I used Bos taurus to build my network ...
written 6 days ago by Leite1.0k
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Answer: A: pathway or network from DEG list tool (plant)
... Hey dear You can try [GeneMANIA][1] using Arabidopsis thaliana as model. > You can also try [STRING][2] Best, Leite [1]: https://genemania.org/ [2]: https://string-db.org/ ...
written 6 days ago by Leite1.0k
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Comment: C: Collapsed to unique genes
... Hey russhh, Yes it's an ExpressionSet. Maybe I found the answer: class(fil_eset_NA3) <- "numeric" is.numeric(fil_eset_NA3) TRUE ...
written 6 months ago by Leite1.0k
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Collapsed to unique genes
... Hello everyone, I've a problem with gene expression analysis. I found a [similar post][1] that I used as a guide, but could not solve my problem. First I downloaded the normalized file directly from GEO. Then, I download the annotation file containing the probe name for gene name and use the `mer ...
gene R written 6 months ago by Leite1.0k
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Answer: A: Software to reconstruct a proteomics-based metabolic pathway
... Dear anna You can try [ESCHER][1] and [MetaboAnalyst][2] [1]: https://escher.github.io/ [2]: https://www.metaboanalyst.ca/ ...
written 8 months ago by Leite1.0k
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Answer: A: Trainning on NGS
... Dear @jahanshanzida I recently updated a bioinformatics curriculum where you can find a number of NGS-related courses. https://www.biostars.org/p/405248/ With regard to book, there is Biostar Handbook which is a good start in NGS. https://www.biostars.org/p/225812/ Best, Leite ...
written 8 months ago by Leite1.0k
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Answer: A: Graphical presentation of STRING protein-protein network and gene ontology
... Dear @F. Golestan >1. generate your network in string db using your list of genes or proteins as shown in **figure 1**. **Figure 1.** >2. Make sure the string list is the same as the list you entered, then proceed **Figure 2** **Figure 2** >3.Select your parameters **Figure 3** ...
written 8 months ago by Leite1.0k
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Comment: C: protein-protein interaction network
... Dear @ F. Golestan I think part of your question is being discussed [here][1] and there is no need for a new question!!! https://www.biostars.org/p/406796/#406869 [1]: https://www.biostars.org/p/406796/#406869 ...
written 8 months ago by Leite1.0k
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Answer: A: Graphical presentation of STRING protein-protein network and gene ontology
... Dear @F. Golestan, Many questions, I will try to answer all. > First question: I commonly use [STRING db][1], and there I put my parameters as Interactions experimentally determined or from curated databases with a minimum interaction score of 0.400. Then I export txt and import it into cytos ...
written 8 months ago by Leite1.0k

Latest awards to Leite

Guru 22 days ago, received more than 100 upvotes.
Popular Question 3 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: Dotplot for filtered pathways result
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Student 4 months ago, asked a question with at least 3 up-votes. For Single-color Agilent array analyzing in R
Popular Question 6 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Popular Question 6 months ago, created a question with more than 1,000 views. For Prediction of peptide function, How to do?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Popular Question 8 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Scholar 8 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Popular Question 8 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Popular Question 8 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Commentator 8 months ago, created a comment with at least 3 up-votes. For C: Dotplot for filtered pathways result
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: How to multiple apply continuous mapping and Discrete mapping each column in Cyt
Appreciated 8 months ago, created a post with more than 5 votes. For Free Bioinformatics Courses(Curriculum)
Popular Question 9 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Scholar 9 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Scholar 9 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics

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