User: Leite
Leite • 1.0k
- Reputation:
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- Location:
- São Paulo - Brazil - Unifesp
- Website:
- http://bioinformaticab...
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- Google Scholar Page
- Last seen:
- 23 hours ago
- Joined:
- 3 years, 10 months ago
- Email:
- g*******@gmail.com
Posts by Leite
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... First, you need to find out which is the closest organism that has interaction data available.
Then you have to change the access to a more general nomenclature, maybe the name gene. ...
written 6 days ago by
Leite • 1.0k
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... Dear @manekineko
Often the organism we work with is not available or has little information, but we can use another as a knowledge base.
Once worked with goat and since I didn't have much information I used Bos taurus to build my network ...
written 6 days ago by
Leite • 1.0k
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... Hey dear
You can try [GeneMANIA][1] using Arabidopsis thaliana as model. >
You can also try [STRING][2]
Best,
Leite
[1]: https://genemania.org/
[2]: https://string-db.org/ ...
written 6 days ago by
Leite • 1.0k
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Comment:
C: Collapsed to unique genes
... Hey russhh,
Yes it's an ExpressionSet.
Maybe I found the answer:
class(fil_eset_NA3) <- "numeric"
is.numeric(fil_eset_NA3)
TRUE ...
written 6 months ago by
Leite • 1.0k
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... Hello everyone,
I've a problem with gene expression analysis. I found a [similar post][1] that I used as a guide, but could not solve my problem.
First I downloaded the normalized file directly from GEO. Then, I download the annotation file containing the probe name for gene name and use the `mer ...
written 6 months ago by
Leite • 1.0k
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... Dear anna
You can try [ESCHER][1] and [MetaboAnalyst][2]
[1]: https://escher.github.io/
[2]: https://www.metaboanalyst.ca/ ...
written 8 months ago by
Leite • 1.0k
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Answer:
A: Trainning on NGS
... Dear @jahanshanzida
I recently updated a bioinformatics curriculum where you can find a number of NGS-related courses.
https://www.biostars.org/p/405248/
With regard to book, there is Biostar Handbook which is a good start in NGS.
https://www.biostars.org/p/225812/
Best,
Leite ...
written 8 months ago by
Leite • 1.0k
5
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... Dear @F. Golestan
>1. generate your network in string db using your list of genes or proteins as shown in **figure 1**.
**Figure 1.**
>2. Make sure the string list is the same as the list you entered, then proceed **Figure 2**
**Figure 2**
>3.Select your parameters **Figure 3**
...
written 8 months ago by
Leite • 1.0k
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... Dear @ F. Golestan
I think part of your question is being discussed [here][1] and there is no need for a new question!!!
https://www.biostars.org/p/406796/#406869
[1]: https://www.biostars.org/p/406796/#406869 ...
written 8 months ago by
Leite • 1.0k
5
votes
2
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649
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... Dear @F. Golestan,
Many questions, I will try to answer all.
> First question:
I commonly use [STRING db][1], and there I put my parameters as Interactions experimentally determined or from curated databases with a minimum interaction score of 0.400. Then I export txt and import it into cytos ...
written 8 months ago by
Leite • 1.0k
Latest awards to Leite
Guru
22 days ago,
received more than 100 upvotes.
Appreciated
5 weeks ago,
created a post with more than 5 votes.
For A: Graphical presentation of STRING protein-protein network and gene ontology
Appreciated
5 weeks ago,
created a post with more than 5 votes.
For A: Graphical presentation of STRING protein-protein network and gene ontology
Popular Question
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created a question with more than 1,000 views.
For How can I improve my R code?
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created a comment with at least 3 up-votes.
For C: Dotplot for filtered pathways result
Teacher
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For A: military application of bioinformatics
Student
4 months ago,
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For Single-color Agilent array analyzing in R
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For How can I improve my R code?
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For Prediction of peptide function, How to do?
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: military application of bioinformatics
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For How can I improve my R code?
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For A: military application of bioinformatics
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For How can I improve my R code?
Popular Question
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For How can I improve my R code?
Teacher
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For A: military application of bioinformatics
Commentator
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created a comment with at least 3 up-votes.
For C: Dotplot for filtered pathways result
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: military application of bioinformatics
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: How to multiple apply continuous mapping and Discrete mapping each column in Cyt
Appreciated
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created a post with more than 5 votes.
For Free Bioinformatics Courses(Curriculum)
Popular Question
9 months ago,
created a question with more than 1,000 views.
For How can I improve my R code?
Scholar
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created an answer that has been accepted.
For A: military application of bioinformatics
Scholar
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created an answer that has been accepted.
For A: military application of bioinformatics
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: military application of bioinformatics
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