User: Leite
Leite • 310
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Posts by Leite
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... I have a list of pathways that I get from differentially expressed genes using MSigDB, all with FDR value <0.05.
Is there any way to find a correlation between the pathways?
Best,
Leite!
...
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... I did some analysis using three different microarray platforms: Illumina v3, U133A and Agilent 4x44K.
Each analysis was done separately and then overlapped the gene list by looking for genes in common.
I found 4 genes in common, however ....
How to choose the probe that best represents my genes (P ...
written 5 weeks ago by
Leite • 310
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... Hey Al-mustanjid,
I I had the same error.
Why don't you try STRING? OR BioGRID3.5?
https://string-db.org/
https://thebiogrid.org/
Best,
Leite ...
written 6 weeks ago by
Leite • 310
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263
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Comment:
C: Gene expression using R
... Dear jrj.healey,
Thank you for the reply and sorry for the mistake.
I think my best option will be a new machine. ...
written 4 months ago by
Leite • 310
0
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263
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Comment:
C: Gene expression using R
... Sorry, I made a mistake, yes it's 6GB and not 6MB ...
written 4 months ago by
Leite • 310
0
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1
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263
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Comment:
C: Gene expression using R
... Dear jrj.healey,
6Mb is the total memory capacity of my computer. ...
written 4 months ago by
Leite • 310
3
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1
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263
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6 follow
1
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... Hello everyone,
I am analyzing a large microarray database, (n = 820), And the R has reached the total memory of my computer
Warning messages:
1: In dimnames(object[[nm]]) <- dn :
Reached total allocation of 6036Mb: see help(memory.size)
2: In dimnames(object[[nm]]) <- ...
written 4 months ago by
Leite • 310
• updated
4 months ago by
Santosh Anand • 4.3k
1
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223
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1
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... Thank you so much my friend! ...
written 5 months ago by
Leite • 310
4
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1
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223
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1
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... Hello everyone,
I have a simple question, the file `series_matrix.txt` in GEO are always the normalized data of the study?
Best,
Leite ...
written 5 months ago by
Leite • 310
• updated
5 months ago by
Kevin Blighe ♦ 33k
1
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1
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786
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1
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... Dear krushnach80,
In our study, we did not use the "TTN" sequence as seed but rather the gene itself.
And yes, just put the name of the gene of interest in BIOGRID as well as in the other databases and find the interactions. ...
written 5 months ago by
Leite • 310
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