User: Leite

gravatar for Leite
Leite300
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Posts by Leite

<prev • 111 results • page 1 of 12 • next >
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Comment: C: Gene expression using R
... Dear jrj.healey, Thank you for the reply and sorry for the mistake. I think my best option will be a new machine. ...
written 26 days ago by Leite300
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Comment: C: Gene expression using R
... Sorry, I made a mistake, yes it's 6GB and not 6MB ...
written 26 days ago by Leite300
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Comment: C: Gene expression using R
... Dear jrj.healey, 6Mb is the total memory capacity of my computer. ...
written 26 days ago by Leite300
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Gene expression using R
... Hello everyone, I am analyzing a large microarray database, (n = 820), And the R has reached the total memory of my computer Warning messages: 1: In dimnames(object[[nm]]) <- dn : Reached total allocation of 6036Mb: see help(memory.size) 2: In dimnames(object[[nm]]) <- ...
R reached total allocation microarray written 26 days ago by Leite300 • updated 26 days ago by Santosh Anand3.8k
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Comment: C: series_matrix.txt in GEO are they always the normalized values?
... Thank you so much my friend! ...
written 6 weeks ago by Leite300
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series_matrix.txt in GEO are they always the normalized values?
... Hello everyone, I have a simple question, the file `series_matrix.txt` in GEO are always the normalized data of the study? Best, Leite ...
geo series_matrix.txt written 6 weeks ago by Leite300 • updated 6 weeks ago by Kevin Blighe26k
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Comment: C: Which method do you use to build adjacency matrix of a genes co-expression netwo
... Dear krushnach80, In our study, we did not use the "TTN" sequence as seed but rather the gene itself. And yes, just put the name of the gene of interest in BIOGRID as well as in the other databases and find the interactions. ...
written 7 weeks ago by Leite300
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Comment: C: Which method do you use to build adjacency matrix of a genes co-expression netwo
... Dear krushnach, With regard to the parameters to filter the key nodes of the network, they come according to the number of nodes and vertices of the network. If you have a large network, you put a high degree, BC and the CC, and the same if it is a small network, you can put a smaller cut-off. Fo ...
written 8 weeks ago by Leite300
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Comment: C: What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Oi Kevin, This point I had not thought of. "The only other thing that you need to ensure is that your column names (in `eset`) are in the same order as your samples in `targets`." Thank you very much for this super tip, it made all the difference now. ...
written 11 weeks ago by Leite300
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Comment: C: What is the best way to analyze non-normalized Illumina HumanHT-12 microarray?
... Boa tarde Kevin, I can find many genes with an adjusted p <0.05. I'll try what you mentioned. What does not make me very comfortable with this code is this function `eset <- readExpressionSet` I'm still studying more about it. ...
written 11 weeks ago by Leite300

Latest awards to Leite

Voter 10 weeks ago, voted more than 100 times.
Centurion 11 weeks ago, created 100 posts.
Popular Question 11 weeks ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 4 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Popular Question 5 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Scholar 8 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Scholar 11 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Supporter 11 months ago, voted at least 25 times.

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