User: Leite

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Leite320
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Posts by Leite

<prev • 121 results • page 1 of 13 • next >
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Comment: C: Dividing the groups on the same axis using ggplot2
... Dear Alex Reynolds, Thanks for the tip, next time I'll put it as indicated. Best, Leite ...
written 21 days ago by Leite320
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Comment: C: Dividing the groups on the same axis using ggplot2
... Dear Prakash This is exactly what I was looking for. Thank you so much! Best, Leite ...
written 21 days ago by Leite320
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Dividing the groups on the same axis using ggplot2
... Initially I [asked a question][1] of how to make a dotplot from a list of pathways. I was able to generate the graph, but now I can not make the groups side by side using the pathways of reference. I do not know if that's how I tabulated my results, or if it's a problem with my code, could anyone ...
R ggplot2 graph dotplot written 22 days ago by Leite320 • updated 22 days ago by Prakash730
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Comment: C: Dotplot for filtered pathways result
... Hey all I managed to do using the ggplot2 data <- read.csv("S1.csv", sep =";", header = TRUE, stringsAsFactors = FALSE) library("ggplot2") S1<- ggplot(data, aes(x="Groups", y=Pathways, size=DEGs, color=FDR)) + geom_point(alpha = 0.8) + facet_grid(Group ~ .) + theme_classic( ...
written 22 days ago by Leite320
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Comment: C: Dotplot for filtered pathways result
... @b.nota thank you for your answer, but I need to represent very specific pathways and doing the manual I believe would not be possible. ...
written 29 days ago by Leite320
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Dotplot for filtered pathways result
... I have a list of pathways that I have filtered from MSigDB and would like to represent them in graphs like this one. Showing the value of FDR and the number of SDRs found in each of the groups (survivors and not) I've tried importing into the R and then using the clusterProfiler as well as ggplot2! ...
pathways ggplot2 clusterprofiler R dotplot written 29 days ago by Leite320 • updated 29 days ago by RamRS20k
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Comment: C: Multiple transcripts for same gene in array gene expression profile?
... Dear @Kevin Blighe, How to proceed with the FDR of each gene? **Example**: if I do a mean of expression between the probes of the same gene, should I also do a mean of FDR value? Would you have any reference to indicate me? Best, Leite ...
written 5 weeks ago by Leite320
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Differential correlation between pathways
... I have a list of pathways that I get from differentially expressed genes using MSigDB, all with FDR value <0.05. Is there any way to find a correlation between the pathways? Best, Leite! ...
pathways correlation written 12 weeks ago by Leite320 • updated 10 weeks ago by Biostar ♦♦ 20
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How to choose the best probe between different microarray platforms?
... I did some analysis using three different microarray platforms: Illumina v3, U133A and Agilent 4x44K. Each analysis was done separately and then overlapped the gene list by looking for genes in common. I found 4 genes in common, however .... How to choose the probe that best represents my genes (P ...
gene R microarray platforms written 3 months ago by Leite320
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Comment: C: Why is not UniHi generating the PPI network?
... Hey Al-mustanjid, I I had the same error. Why don't you try STRING? OR BioGRID3.5? https://string-db.org/ https://thebiogrid.org/ Best, Leite ...
written 3 months ago by Leite320

Latest awards to Leite

Popular Question 7 days ago, created a question with more than 1,000 views. For PANTHER GENE LIST
Popular Question 3 months ago, created a question with more than 1,000 views. For Microarray analysis in limma
Popular Question 4 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 4 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 4 months ago, created a question with more than 1,000 views. For Microarray analysis in limma
Popular Question 4 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Voter 8 months ago, voted more than 100 times.
Centurion 8 months ago, created 100 posts.
Popular Question 8 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 10 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to interpret data from PANTHER GO?
Scholar 14 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Scholar 17 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
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