User: Leite

gravatar for Leite
Leite950
Reputation:
950
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Trusted
Location:
São Paulo - Brazil - Unifesp
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Google Scholar Page
Last seen:
23 hours ago
Joined:
3 years, 6 months ago
Email:
g*******@gmail.com

Posts by Leite

<prev • 152 results • page 1 of 16 • next >
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Comment: C: Collapsed to unique genes
... Hey russhh, Yes it's an ExpressionSet. Maybe I found the answer: class(fil_eset_NA3) <- "numeric" is.numeric(fil_eset_NA3) TRUE ...
written 12 weeks ago by Leite950
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Collapsed to unique genes
... Hello everyone, I've a problem with gene expression analysis. I found a [similar post][1] that I used as a guide, but could not solve my problem. First I downloaded the normalized file directly from GEO. Then, I download the annotation file containing the probe name for gene name and use the `mer ...
gene R written 12 weeks ago by Leite950
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Answer: A: Software to reconstruct a proteomics-based metabolic pathway
... Dear anna You can try [ESCHER][1] and [MetaboAnalyst][2] [1]: https://escher.github.io/ [2]: https://www.metaboanalyst.ca/ ...
written 4 months ago by Leite950
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Answer: A: Trainning on NGS
... Dear @jahanshanzida I recently updated a bioinformatics curriculum where you can find a number of NGS-related courses. https://www.biostars.org/p/405248/ With regard to book, there is Biostar Handbook which is a good start in NGS. https://www.biostars.org/p/225812/ Best, Leite ...
written 4 months ago by Leite950
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Answer: A: Graphical presentation of STRING protein-protein network and gene ontology
... Dear @F. Golestan >1. generate your network in string db using your list of genes or proteins as shown in **figure 1**. **Figure 1.** >2. Make sure the string list is the same as the list you entered, then proceed **Figure 2** **Figure 2** >3.Select your parameters **Figure 3** ...
written 4 months ago by Leite950
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Comment: C: protein-protein interaction network
... Dear @ F. Golestan I think part of your question is being discussed [here][1] and there is no need for a new question!!! https://www.biostars.org/p/406796/#406869 [1]: https://www.biostars.org/p/406796/#406869 ...
written 4 months ago by Leite950
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Answer: A: Graphical presentation of STRING protein-protein network and gene ontology
... Dear @F. Golestan, Many questions, I will try to answer all. > First question: I commonly use [STRING db][1], and there I put my parameters as Interactions experimentally determined or from curated databases with a minimum interaction score of 0.400. Then I export txt and import it into cytos ...
written 4 months ago by Leite950
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Comment: C: normalization of Agilent data
... Add the code you are using, this may help us to find the possible error. ...
written 4 months ago by Leite950
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
... Dear @F. Golestan From my experience working with network (PPIN), I advise you to import data from [cytoscape][1] so you will have more flexibility to work by changing colors, font size, node color and whatever you want to change your layout. With regards to DAVID, you can download GO result and b ...
written 4 months ago by Leite950
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Comment: C: can I use cytoscape for genie3 result?
... @Ali To process 19k interactions in cytoscape, you would have to have a super computer. Another point, your network would be unreadable. You need to put a weight filter for interactions, then import into cytoscape. Get only the links with a weight higher than some threshold >"Alternatively, a ...
written 4 months ago by Leite950

Latest awards to Leite

Popular Question 11 weeks ago, created a question with more than 1,000 views. For How can I improve my R code?
Popular Question 11 weeks ago, created a question with more than 1,000 views. For Prediction of peptide function, How to do?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Popular Question 4 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Scholar 4 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Popular Question 4 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Popular Question 4 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Commentator 4 months ago, created a comment with at least 3 up-votes. For C: Dotplot for filtered pathways result
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How to multiple apply continuous mapping and Discrete mapping each column in Cyt
Appreciated 4 months ago, created a post with more than 5 votes. For Free Bioinformatics Courses(Curriculum)
Popular Question 4 months ago, created a question with more than 1,000 views. For How can I improve my R code?
Scholar 5 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Scholar 5 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Scholar 5 months ago, created an answer that has been accepted. For A: military application of bioinformatics
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: military application of bioinformatics
Popular Question 5 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Student 6 months ago, asked a question with at least 3 up-votes. For Single-color Agilent array analyzing in R
Popular Question 7 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 9 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?
Popular Question 9 months ago, created a question with more than 1,000 views. For How to access the tranche repository (proteomics data repository)?

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