User: Raony Guimaraes

gravatar for Raony Guimaraes
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http://www.torchmed.com
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6 years, 3 months ago
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6 years, 7 months ago
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r************@gmail.com

Posts by Raony Guimaraes

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Failed Annotating The Example Vcf File In The Installation Folder Of Vcftools
... Hello, I end up using a lot more VariantAnnotator from GATK to treat my VCF files against anything I really want. I gave up using vcf-annotate, it's not very functional... Right now I'm annotating using 1000genomes(nov2011), dbsnp135, Exome Variation Server, snpeff. And after this I also created a p ...
written 6.3 years ago by Raony Guimaraes100
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What Is Going To Be The Impact Of U$1000 Genome ?
... Sooner than later U$1000 genomes has arrived to our lifes! What is going to be the impact of this to the field of Bioinformatics ? I just would like to hear some comments about this news from people in here. Does anyone know more about the technology ? Source: http://news.jornal.us/article-6108.Ion ...
genome ion-torrent written 6.4 years ago by Raony Guimaraes100 • updated 2.6 years ago by Biostar ♦♦ 20
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Answer: A: Easy Way To Change Reference Alleles In Large Vcf File?
... May be you could do something like this: grep "^#' yourFile.vcf > newvcffile.vcf grep -v "^#" yourFile.vcf | awk '{printf $1, $3, $2, $4... }' >> newvcffile.vcf ...
written 6.5 years ago by Raony Guimaraes100
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Convert Vcf From Hg18 To Hg19 Using Liftovervcf.Pl
... Hello I'm trying to convert my vcf file from 1000 genomes pilot study 2 (trios) that I believe was annotated with hg18 to hg19 using this Broad Tool: http://www.broadinstitute.org/gsa/wiki/index.php/LiftOverVCF.pl At this directory I found: ftp://ftp.broadinstitute.org/Liftover_Chain_Files/ Inde ...
vcf conversion liftover hg written 6.6 years ago by Raony Guimaraes100 • updated 3.6 years ago by Biostar ♦♦ 20
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Download Dbsnp135
... Where I can find dbsnp135 ? This address still not updated: ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/00-All.vcf.gz ...
vcf dbsnp written 6.6 years ago by Raony Guimaraes100 • updated 3 months ago by Biostar ♦♦ 20
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Snps Related With Breast Cancer - Dataset
... Hello I'm looking for a dataset of snps from patients with breast cancer to compare with snps from normal patients. I only could find affymetrix data and it's about 7GB per patient on GWAS Studies. I would like to compare using only about 500 snps not 500k from > 100 patients. Is there a way to ...
dataset snp cancer written 6.6 years ago by Raony Guimaraes100 • updated 6.2 years ago by Chris Miller19k

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