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Posts by martinguerrerog89
... Recently ***getGEO*** function of the package GEOquery suddenly started throwing the following error: gse=getGEO("GSE106977",GSEMatrix=T) #https://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106977/matrix/ #OK #Found 2 file(s) #/geo/series/GSE106nnn/GSE106977/ #Error i ...
... Hi! I had the same UUIDs to TCGA ID problem. I solved it using R to write a JSON sentence that is the used in the command line [Here i wrote a post about it] Hope it is usefull! : https://www.biostars.org/p/215175/ ...
... For those not familiar with the command line and with the JSON query language, here is a fairly simple way to map UUIDS to TCGA barcode ID using R and a canned command in the terminal **The first part is in R** *1) Extract the files ID from your manifest file (the one you get from the GDC after yo ...
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