User: martinguerrerog89

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Posts by martinguerrerog89

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Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
... Recently ***getGEO*** function of the package GEOquery suddenly started throwing the following error: gse=getGEO("GSE106977",GSEMatrix=T) #https://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106977/matrix/ #OK #Found 2 file(s) #/geo/series/GSE106nnn/GSE106977/ #Error i ...
geo R tutorial geoquery microarray written 10 months ago by martinguerrerog89260 • updated 4 months ago by zx87546.0k
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Comment: C: Protocol To Downlad TCGA Data From GDC
... Hi! I had the same UUIDs to TCGA ID problem. I solved it using R to write a JSON sentence that is the used in the command line [Here i wrote a post about it][1] Hope it is usefull! [1]: https://www.biostars.org/p/215175/ ...
written 2.1 years ago by martinguerrerog89260
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Tutorial: TCGA UUIDS to TCGA barcode (SampleID) in R
... **Update, 12th May 2018** Since this post was made, a rapid way to interrogate the GDC data for the purposes of converting UUIDs to TCGA Barcodes was found using R Programming Language. See the thread here: https://www.biostars.org/p/306400/ Kevin, Moderator. ----------------------------------- ...
R tutorial next-gen gdc tcga written 2.2 years ago by martinguerrerog89260 • updated 7 months ago by saraholiver3070

Latest awards to martinguerrerog89

Popular Question 24 months ago, created a question with more than 1,000 views. For TCGA UUIDS to TCGA barcode (SampleID) in R
Appreciated 2.1 years ago, created a post with more than 5 votes. For TCGA UUIDS to Sample ID in R

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