User: Rks

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Rks20
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Location:
European Union
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3 days, 5 hours ago
Joined:
10 years, 1 month ago
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r*******@gmail.com

Posts by Rks

<prev • 7 results • page 1 of 1 • next >
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Comment: A: HISAT2 "error: Encountered internal HISAT2 exception (#1)"
... see my reply here: https://www.biostars.org/p/256803/#443280 ...
written 22 days ago by Rks20
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Comment: A: HISAT error: Encountered internal HISAT2 exception (#1)
... I got this error because the hisat2 indexing job was killed for exceeding memory limitation. Without checking the indexing log, I started running hisat2 alignment and that gave me this error. ...
written 22 days ago by Rks20
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Answer: A: kraken and kraken2: Downloading taxonomy tree data...rsync: error while loading
... Did you try using option --use-ftp kraken-build -standard --threads 20 --db MY_KRAKEN_DATABASE --use-ftp ? ...
written 3 months ago by Rks20
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MultiGPS replicate count
... Hi All I am currently running MultiGPS for Chipseq data analysis. There was three different time points of data collection. At each time point, three samples were collected. Each sample has one control and four signal replicates. The analysis generated a replicate.count file (tab-separated) that lo ...
multigps count replicate chip-seq written 5.3 years ago by Rks20
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Forum: Biojava Noclassdeffounderror
... Hi All I searched if there is any thread regarding biojava NoClassDefFoundError, so here I am creating one. I am doing mulitple seqeunce alignment using Pyro_align and I ran into this error. Exception in thread "main" java.lang.NoClassDefFoundError: org/biojava/bio/seq/db/SequenceDB at SAPNA.ma ...
biojava forum classification error written 8.1 years ago by Rks20 • updated 8.1 years ago by Istvan Albert ♦♦ 84k
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Answer: A: What Is The Sequencing 'Depth' ?
... I believe that Depth refers to coverage itself which again means how many times a particular base is sequenced by NGS technology. I read this in the paper "A bioinformatian's guide to metagenomics". ...
written 10.1 years ago by Rks20
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Answer: A: Which Assembler To Use For Metagenomic Sequences?
... I am also curious to know the assembly program for the metagenomic samples. Most of the program i know like euler, velvet, arachne etc are designed for assembling genome from single species. Can these genome assembler be used for metagenome assembly of illumina reads? However i know about metasim bu ...
written 10.1 years ago by Rks20

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Popular Question 5.3 years ago, created a question with more than 1,000 views. For MultiGPS replicate count
Popular Question 5.3 years ago, created a question with more than 1,000 views. For Biojava Noclassdeffounderror

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