User: sophiespo

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sophiespo0
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Posts by sophiespo

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Answer: A: Plotting copy number varation: amplification and deletion data from GISTIC
... That's a RAE plot. The tool is here: http://cbio.mskcc.org/downloads/rae/ The publication is here: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0003179 The most similar thing I've found is: https://www.biostars.org/p/17762/#17779 ...
written 22 months ago by sophiespo0
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Answer: A: RAE algorithm in Copy number alterations
... Publication: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0003179 Download and manual: http://cbio.mskcc.org/downloads/rae/ ...
written 22 months ago by sophiespo0
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Comment: C: Copy number variation plot (R package)
... You can run GISTIC on sequencing data. It isn't that hard. There is a google group (gistic-forum) where this question is asked a lot, and I wrote a detailed solution that works for me every time. ...
written 22 months ago by sophiespo0

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