User: rickbeeloo13

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Posts by rickbeeloo13

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Comment: C: Compare sequence with MSA consensus
... Thankyou! I have one problem using HMMER when I use this command: > hmmbuild --amino --informat "CLUSTAL" "hmmCytopolasm.hmm" > "input.clustal" I get the error: > Error: CLUSTAL is not a recognized input sequence file format **Any idea what I did wrong here?** I can convert it to ...
written 2.2 years ago by rickbeeloo130
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Compare sequence with MSA consensus
... I have done a multiple sequence alignment for two proteins with similair sequence, however there are some minor differences which discriminate a cytoplasmic form from a mitochondria form. I downloaded the output of the MSA alignment as a consensus sequence and now I want to "blast" this against a ge ...
sequence alignment blast written 2.2 years ago by rickbeeloo130 • updated 2.2 years ago by ddiez1.7k
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Color nodes based on attribute(column in data table) in cytoscape
... I merged to networks (MPK3 and MPK6 regulated proteins) and uploaded this in Cytoscape. Know I have a column for these two called source which is MPK3 for the MPK3 proteins and MPK6 for the MPK6 proteins. I want to color the proteins based on the value in this "source" column(attribute) I saw some ...
protein network cytoscape proteins written 2.6 years ago by rickbeeloo130 • updated 2.6 years ago by Jean-Karim Heriche18k

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