User: eroberts

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eroberts0
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Posts by eroberts

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Comment: C: How to download latest human AGP chromosome files (no alts, MT, unplaced, unloca
... I've thought about using the parallel option, if I went that route I'd still have to worry about the patch number which may change. Also with the 2nd wget command, it still runs into the issue of not being patch number agnostic. You can also put the bash sequences into a single "{}" like so: "{{1.. ...
written 6 weeks ago by eroberts0
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Comment: C: How to download latest human AGP chromosome files (no alts, MT, unplaced, unloca
... My mistake, yes I meant only MT file as well. ...
written 6 weeks ago by eroberts0
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Comment: C: How to download latest human AGP chromosome files (no alts, MT, unplaced, unloca
... Unfortunately, this retrieves the alt, MT, unplaced and unlocalized AGP files as well which doesn't suit my 3rd requirement. There is always the option of having this done in multiple commands by removing the unnecessary chromosomes afterwards but again I'm trying to keep this as short and simple as ...
written 6 weeks ago by eroberts0
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How to download latest human AGP chromosome files (no alts, MT, unplaced, unlocalized) from NCBI?
... Hello, Currently I'm trying to figure out how to download the latest patch of the hg38 assembly in AGP format from [NCBI][1]. I have some oddly stringent requirements which makes this process difficult: 1. I need to make the command as short and as simple as possible for other users to use. 2. It ...
assembly bash hg38 human agp written 6 weeks ago by eroberts0 • updated 6 weeks ago by cpad01128.3k

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