User: evovaldo

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evovaldo0
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Posts by evovaldo

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Answer: A: Vcf-consensus does not replace the variants of the VCF in the output Fasta file
... Hi microfuge, I tried to replace randomly some of the genotypes with 0/1 or 1/1 because I don't have GT:AD:DP:GQ:PL information probably because I obtained the vcf from the 1000 genomes data slice. However, no replacement is observed. ...
written 2.5 years ago by evovaldo0
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Answer: A: Vcf-consensus does not replace the variants of the VCF in the output Fasta file
... Tanks to you.....I'll try to do that. ...
written 2.5 years ago by evovaldo0
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Answer: A: Vcf-consensus does not replace the variants of the VCF in the output Fasta file
... I think was wrong. There is a genotype GT 0|0 for all variants. ...
written 2.5 years ago by evovaldo0
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Answer: A: Vcf-consensus does not replace the variants of the VCF in the output Fasta file
... This is part of the VCf file which I created using ensembl for a specific chr19 region. There is not genotypes on it. CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG01191 19 45393826 rs568341751 G C 100 PASS AA=.|||;AC=0;AF=0.000199681;AFR_AF=0;AMR_AF=0;AN=2;DP=20113;EAS_AF=0.001;EUR_AF=0;NS=2504; ...
written 2.5 years ago by evovaldo0
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Vcf-consensus does not replace the variants of the VCF in the output Fasta file
... Hello, I'm trying to get a consensus fasta file using a Reference.fa and a Vcf.gz. To do that I first do: ##To zip the VCF bgzip -c file.vcf > file.vcf.gz ##To tabix the VCF tabix -p vcf file.vcf.gz ##After I Use: cat file.fa | vcf-consensus vcf.gz > out.fa However the out.fa does not ...
genome software error sequence written 2.5 years ago by evovaldo0

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