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Posts by jjaimi921129
... What if my bam files are not sorted, what actually does samtools merge do then? because I've just run samtools merge with unsorted bam files. many thanks! ...
... Sorry I am new to bioinformatics too... I have problem on getting mean coverage, I've tried 'bedtools coverage' and 'samtools pileup', but the outputs are per site or region. I was wondering how can I get just one value (say 70X) averaged depth for CDS regions. ...
... Sorry I am new to bioinformatics. I have used 'samtools mpileup', but how can I get mean value for the depth column. Thanks. ...
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