User: jjaimi921129

gravatar for jjaimi921129
jjaimi92112910
Reputation:
10
Status:
New User
Location:
Last seen:
2 years, 6 months ago
Joined:
2 years, 8 months ago
Email:
j***********@gmail.com

Posts by jjaimi921129

<prev • 3 results • page 1 of 1 • next >
0
votes
1
answer
2.6k
views
1
answers
Comment: C: reheadering, merging and sorting on different bam file
... What if my bam files are not sorted, what actually does samtools merge do then? because I've just run samtools merge with unsorted bam files. many thanks! ...
written 2.5 years ago by jjaimi92112910
0
votes
0
answers
663
views
0
answers
Comment: C: Calculating coverage from ref and alt columns?
... Sorry I am new to bioinformatics too... I have problem on getting mean coverage, I've tried 'bedtools coverage' and 'samtools pileup', but the outputs are per site or region. I was wondering how can I get just one value (say 70X) averaged depth for CDS regions. ...
written 2.7 years ago by jjaimi92112910
1
vote
11
answers
139k
views
11
answers
Comment: C: Tools To Calculate Average Coverage For A Bam File?
... Sorry I am new to bioinformatics. I have used 'samtools mpileup', but how can I get mean value for the depth column. Thanks. ...
written 2.7 years ago by jjaimi92112910

Latest awards to jjaimi921129

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1227 users visited in the last hour