User: ashMC

gravatar for ashMC
ashMC10
Reputation:
10
Status:
New User
Location:
Last seen:
4 months, 3 weeks ago
Joined:
3 years, 1 month ago
Email:
a**************@gmail.com

Posts by ashMC

<prev • 5 results • page 1 of 1 • next >
1
vote
1
answer
636
views
1
answers
Answer: A: RNA-Seq time series analysis using ImpulseDE2 software
... Just to add to this conversation in regards to 1), in the manual (you can find it on Bioconductor) it explicitly says the following: "Missing values are not supported. Genes having missing values for at least one sample will be excluded from the analysis." This may be why you are not getting any ...
written 4 months ago by ashMC10
0
votes
2
answers
8.0k
views
2
answers
Comment: C: Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
... Hello, When I do this, I get the following error. What is the meaning of 'reference_files/GRCh38' after the 'reference_files/GRCh38.no_alt_analysis_set.fna.bowtie_index'? It would see that the second 'reference_files/GRCh38' is a typo? Also - if I need a transcriptome-index file ('--transcripto ...
written 3.1 years ago by ashMC10
0
votes
2
answers
8.0k
views
2
answers
Comment: C: Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
... GRCh38.no_alt_analysis_set.fna.bowtie_index.1.bt2l (then the same for 2,3,4 and rev.1,rev.2) ...
written 3.1 years ago by ashMC10
0
votes
2
answers
8.0k
views
2
answers
Comment: C: Tophat error: missing .bt2l but I only have .bt2 files
... That does not work. I get the same error Error: Could not find Bowtie 2 index files (reference_files/GRCh38.*.bt2l) ...
written 3.1 years ago by ashMC10
4
votes
2
answers
8.0k
views
2
answers
Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
... I am running tophat/2.1.1 and using bowtie/2.2.9. I run the following commands, and get the following errors. tophat -G reference_files/Homo_sapiens.GRCh38.86.gtf -p4 -o tophat_results/ reference_files/GRCh38 data/S_01_L003_R1.fastq And I get the following error: [2016-11-03 16:39:02] Be ...
bowtie2 tophat tophat2 bowtie rna-seq written 3.1 years ago by ashMC10 • updated 3 months ago by Arnaud Ceol850

Latest awards to ashMC

Great Question 3.0 years ago, created a question with more than 5,000 views. For Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Error: Could not find Bowtie 2 index files (GRCh38.*.bt2l)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2156 users visited in the last hour