User: chetana

gravatar for chetana
chetana40
Reputation:
40
Status:
New User
Location:
San Diego
Last seen:
3 months ago
Joined:
3 years, 1 month ago
Email:
c************@gmail.com

Posts by chetana

<prev • 25 results • page 1 of 3 • next >
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Comment: C: How To Efficiently Sort A Fastq File By Entry Id?
... Hi dariober, Thank you so much the quick fix, it worked. The subseq function from seqtk is adding tabs in the read name for reason. But this would fix it when someone's trying to sort their fastq after the subseq. I appreciate your help. Chetana ...
written 3 months ago by chetana40
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Comment: C: How To Efficiently Sort A Fastq File By Entry Id?
... Hi, It's been a while that someone updated this post but I'm looking to find help regarding the above one liner I used to sort my barcodes fastq file. When I ran the linux command on my barcodes.fastq file, the later part of the header "1:N:0:1" has been moved to next line and I'm not sure why. Ple ...
written 4 months ago by chetana40
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Comment: C: mRNA.Exp[[page.Counter]] : subscript out of bounds
... Hi, Were you able to fix that error? I've just come across the error and never really used FirebrowseR before. Any help would be appreciated! Thanks. ...
written 8 months ago by chetana40
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Retrive orthologs for coral housekeeping genes
... Hi, I have a list of genes named beta-actin, ribosomal protein L12 and Ploy(a) binding protein. These genes under any condition tend to be stable in cnidaria and hence can be used as candidate genes to normalize gene expression data (http://www.sciencedirect.com/science/article/pii/S0165022X0700156 ...
gene database written 16 months ago by chetana40
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Comment: A: Conditionally coloring the fold change values to plot a heatmap using pheatmap
... Please find the code below. Patterns are the way set of few genes fall into a category based on their expression across the timepoints and I just used it for the row annotation. library(pheatmap) library(RColorBrewer) geneExp <- read.table("ICL004-R_Pattern1-10.txt", ...
written 21 months ago by chetana40
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Conditionally coloring the fold change values to plot a heatmap using pheatmap
... Hi all, I'm trying to plot a heat map with fold change (log2 values) values ranging from almost -100 to 100 across 6 time points. There are actually very few points in the extreme ranges of fold change. I was planning on plotting just the -10 to 10 range in the scale with differing color intensity ...
bioinformatics heatmap R written 21 months ago by chetana40
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Comment: C: How to import both node and edge files into cytoscape from WGCNA?
... Are you using desktop version of Cytoscape? If so is it MAC or windows? ...
written 23 months ago by chetana40
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Comment: C: RShiny interactive volcano plots
... Hi Jacob, it worked. Thank you so much. ...
written 24 months ago by chetana40
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Comment: A: RShiny interactive volcano plots
... `ui <- fluidPage( titlePanel("Volcano Plotly"), fluidRow( column( width = 10, plotlyOutput("volcanoPlot", height = "500px") ), column( width = 8, dataTableOutput("selectedProbesTable") ) ) ...
written 24 months ago by chetana40
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Comment: C: RShiny interactive volcano plots
... Thanks for your reply Steve and sorry if I was not clear asking the question. Here I include the headers of the dataframe as an example as the data is really huge. ***probe gene_symbol Timepoint0_FC Timepoint0_P Timepoint3_FC Timepoint3_P Timepoint7_F Timepoint7_P*** Here FC is the foldchange ...
written 24 months ago by chetana40

Latest awards to chetana

Popular Question 15 months ago, created a question with more than 1,000 views. For RShiny interactive volcano plots
Popular Question 15 months ago, created a question with more than 1,000 views. For Conditionally coloring the fold change values to plot a heatmap using pheatmap
Popular Question 15 months ago, created a question with more than 1,000 views. For RNA Seq data network analysis
Popular Question 19 months ago, created a question with more than 1,000 views. For RNA Seq data network analysis
Popular Question 19 months ago, created a question with more than 1,000 views. For Retrieve species name using taxaIDs of NCBI

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