User: support

gravatar for support
support40
Reputation:
40
Status:
New User
Location:
Last seen:
2 years, 6 months ago
Joined:
2 years, 8 months ago
Email:
s******@selfdecode.com

Posts by support

<prev • 16 results • page 1 of 2 • next >
3
votes
2
answers
2.6k
views
2
answers
Answer: A: How to access GeneCards via XML?
... They have some serious anti scraping measures in place. I attempted to scrape it with a PHP web crawler tool, I quickly ran into an obstacle: ![enter image description here][1] The page is stored inside an iframe. The URL of the page in the iframe: /_Incapsula_Resource?CWUDNSAI=9&xinfo=9- ...
written 2.6 years ago by support40
0
votes
0
answers
1.1k
views
0
answers
Importing KEGG pathways into cytoscape
... I installed cytoscape, and install the KEGGScape app for it. So I imported the KGML file for the citric acid cycle pathway. Heres what came up in cytoscape: ![enter image description here][1] Completely incomprehensible. Its supposed to look something more like this: ![enter image description here ...
kegg cytoscape keggscape written 2.6 years ago by support40
0
votes
2
answers
894
views
2
answers
Answer: A: Where can I find out if a gene is increased or decreased I in certain diseases?
... Thank you!! TVP is exactly the kind of thing I'm looking for. I've already gathered lots of GWAS studies,but RNA expression is a whole other dimension to approach it from, and this removes the variables associated with SNPs (as in the way haplotypes and other SNP-SNP influence the p-values of SNP-di ...
written 2.7 years ago by support40
0
votes
0
answers
931
views
0
answers
Where can I fiind a database that tells you how specific variants alter the functioning of a gene
... I'm aware that science hasn't evolved far enough that we have a good understanding, and accurate computational prediction software for this kind of thing, but I'm guessing there must be plenty of geneticists dedicating their work to finding out how specific variants alter the functioning of the gene ...
variant effects gene expression computational written 2.7 years ago by support40
0
votes
1
answer
1.9k
views
1
answers
Answer: A: ChEBI Web Services - Making a PHP SOAP Client
... It was actually very easy, heres the code for the PHP SOAP client I made: options = array( 'uri'=>$this->nameSpace, 'trace'=>true, 'encoding'=>'UTF-8', 'exceptions'=>true, ); $this->client = new SoapClient($this-> ...
written 2.7 years ago by support40
2
votes
2
answers
894
views
2
answers
Where can I find out if a gene is increased or decreased I in certain diseases?
... I have a list of genes, and a list of diseases. I need to find out whether the gene expression is increased or decreased in the diseases. Like for example, TNF activity is often increased in various types of cancer. Is there a database that has this information? I checked out DisGeNET which is suppo ...
gwas gene express diseases written 2.7 years ago by support40
0
votes
1
answer
1.9k
views
1
answer
ChEBI Web Services - Making a PHP SOAP Client
... On the ChEBI Web Services page: https://www.ebi.ac.uk/chebi/webServices.do They give two examples of SOAP Clients for retrieving data from ChEBI, one of them is written in Java, one of them written in Perl. Heres the Perl example: #!/usr/bin/perl -w # SOAP::Lite version 0.67 # Please n ...
api chebi soap php written 2.7 years ago by support40
0
votes
0
answers
928
views
0
answers
How to download ChEBI Ontology Classes
... I downloaded the ChEBI .sql files from here: https://www.ebi.ac.uk/chebi/downloadsForward.do and they have the list of compounds and relationships between compounds, but I can't find anywhere in there the list of ontological classes. For example: Flavonoids: https://www.ebi.ac.uk/chebi/searchId.do?c ...
chebi owl ontology written 2.7 years ago by support40 • updated 2.5 years ago by Biostar ♦♦ 20
0
votes
1
answer
4.3k
views
1
answers
Comment: A: Common name to latin/scientific name converter
... I installed Ubuntu in VirtualBox and the edirect tools work just fine. Its insane how much easier web development is in linux. I spent hours trying to integrate PostGESQL and python into a WAMP server. In Ubuntu I did it in seconds with a single command. ...
written 2.7 years ago by support40
0
votes
1
answer
4.3k
views
1
answers
Comment: C: Common name to latin/scientific name converter
... I installed cygwin, and tried it with the version of Bash that came with it, heres the error I got: horse@LAPTOP-72BLDDCI /usr/bin $ esearch -db taxonomy -query "Morning Glory Pellicia" 5 [main] dirname (14896) C:\Program Files\Git\usr\bin\dirname.exe: *** fatal error - cygheap base m ...
written 2.7 years ago by support40

Latest awards to support

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1534 users visited in the last hour